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Hi! I can't tell if there are any previous reports of this error, because I can't seem to see any other issues on the Github.
I recently ran a screen with the Zuber lab's 2-guide human library, usi…
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Dear Dr. Sean,
I hope this message finds you well. I am writing to express my admiration for your recent publication in Current Biology titled "High viral abundance and low diversity are associated…
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The BioGRID database:
https://thebiogrid.org/
has recently started curating phenotypes resulting from CRISPR screens in human cell lines and have compiled the results of their curation into the …
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**`preprocessing`**
- [x] Implement function to add pseudocounts
**`phenoscore`**
- [x] #25
- [x] #71
- [x] #80
- [x] #85
- [x] #17
- [x] #87
- [x] #16
- [ ] Compare sequencing count …
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For the guide-pooled screen,article focused on the 8,448 cells with 3 or more guides. When I was follow ,there are some issue. effect size is NaN or 0.
[/nis_home/FR-Perturb/bin/python /locald/FR-…
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From: Anne Carpenter
Date: Fri, Dec 1, 2023 at 2:44 PM
Hi Ardigen/Ksilink,
Using this attached plot from Ardigen of the top 25 most anti-correlated pairs, I saw MYT1-RNF41.
So, I found someon…
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@rasi, @gquarter has generated some results from her GO analysis using the splicing CRISPR screen data, see [here](https://cbl-gorilla.cs.technion.ac.il/GOrilla/zctdtiao/GOResults.html). Do you have a…
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Hi Timothy,
I am completely new in bioinformatics and now I have data on 10X CRISPR screen to analyse. I will like to use sceptre Nextflow tool. Before using my data I will like to go through the "Ga…
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Hi,
CB2 program is very useful for analyzing pooled crispr screen.
I have one question. When I analyze the raw data, 1-2 mismatches are found in my fastq file.
So, Can I consider the 1bp misma…
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When I tried to run the tutorial script available from CRAN, the function run_sgrna_count() could not be found. Could you try and fix this issue? It'd be great to try your package on pooled CRISPR scr…