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Regarding https://github.com/flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1/pull/100
I had issues installing, specifically this line of the installs https://github.com/I2PC/Flexutils-Toolkit/b…
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This model is a fixed PS envelope, with this functional form and constant values.
The phases are sampled uniformly.
The constants were fit to agree with explicit water from MD simulations. These…
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Discussions with Lothar Houben: Cryo EM generates very large amounts of data. LiberTEM could be a good solution for preprocessing and extracting relevant data from a large-scale raw data set.
As fa…
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Targets include SDSU, Merit
epcjr updated
4 years ago
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ESRF and Diamond have been discussing new tables and table changes for cryo-EM to accommodate software further downstream in the pipeline than we have previously discussed.
The discussion is still …
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**Update**: I created a table to keep track of datasets. It's available [here](https://docs.google.com/spreadsheets/d/1PnATNLBFIilLSYlriOtQuYzXUXB9EEcoaFH0l9wv9ls/edit?usp=sharing).
- [aiSEGCell](h…
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Especially large memory burden from gt flat files (160 GB). Perhaps include a smaller version with some averaging...
Would also be good to benchmark memory useage.
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code :
protein_description = struct.getValue('pdbx_descriptor')
protein_description = protein_description.replace('\n', ' ')
protein_description = protein_descri…
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# What?
- [ ] Create a module `density_maps.py` in the folder [ioSPI](https://github.com/compSPI/ioSPI/blob/master/ioSPI/) that provides code to manipulate data structures of density maps. (see Secti…