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```
for x in $(find . -name "*.md"); do wc -w $x; done | awk -F ' ' '$1
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## Overview
At the Aug 14 meeting w/ Nico, Shahim, Madan, and Joe ([notes](https://docs.google.com/document/d/1CR6FEmt2kxFb-te-X8Hn8fOIgQ61x9DZHSchCZnifrQ/edit) | [recording](https://drive.google.com…
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**Context**
We have a set of grouping classes for grouping neuron types by neurotransmitter secretion. It should be straightforward to write a DOSDP class to cover these. Adding new ones will lik…
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```yaml
vars:
secretion: 'hormone secretion'
cell: 'native cell'
EquivalentTo:
text: %s that 'capable of' some (%s and ('has target end location' some 'circulatory system'))
vars: …
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This ticket is being worked on right now. The goal is to take any two dosdp patterns and a bunch of instance data and get an SSSOM file out on the other end.
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We need a method in dosdp which takes in a dosdp yaml file an returns it in a nicely canonical form:
We will use the ordering directly from the json schema, its perfect:
https://github.com/INCAT…
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structure
```
src/schema/dosdp_schema.yaml # = spec/DOSDP_schema_full.yaml
src/schema/test/
src/schema/test/generic_test # Is it valid JSON schema.
src/schema/test/positive_test_set/ # Some…
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https://github.com/obophenotype/upheno/blob/222be547e229e2cccc2b30a50905f0a852cd8ea9/src/patterns/dosdp-dev/abnormalHasFewerPartsOfTypeAnatomicalEntity.yaml#L34
For terms like "anatomical entity", …
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we need a pattern to model abnormal detachment of an entity from another entity
example: detached Reissner membrane (http://purl.obolibrary.org/obo/MP_0006023)
modification of https://raw.githubuser…
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Based on pattern used in
Tan, Shawn Zheng Kai, Huseyin Kir, Brian D. Aevermann, Tom Gillespie, Nomi Harris, Michael J. Hawrylycz, Nikolas L. Jorstad, et al. 2023. “Brain Data Standards - A Method …