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publication: https://academic.oup.com/nar/article/51/D1/D1288/6761740
example drug record: http://drugmap.idrblab.net/data/drug/details/DM6A0X7
download page: http://drugmap.idrblab.net/full-data-do…
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Dear author, hello,
My drug has multiple targets (more than three). How do I find the cell type that this drug acts on?
![微信截图_20240605155711](https://github.com/ZJUFanLab/scRank/assets/52884990/27…
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I want to add predicates to the model.
'target': a subject (drug/small molecule) "target" an object (protein/gene)
'target by': a subject (protein/gene) is "targeted by" an object (drug/small mole…
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#### Describe the problem
TRAPI queries for drug-target predictions do not return any results. Tested and reproducible in dev and all ITRB environments. Using the example query suggested in the doc…
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# Summary
The open targets database has [multiple interesting datasets](https://platform.opentargets.org/downloads) that could be incorporated into this project.
We can also enrich these dataset…
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We need to figure out the plan how we scientifically validate the data we produce.
@xyg123 could you please add the summary we discussed yesterday?
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Hi:
Great work !
But i'am little confused when use the code and file provided.
> In total, we extracted 551 drugs with 1915 known targets (702 unique targets, 3.48 targets per drug on average).
…
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have successfully created nodes by adding more `open-targets` categories. However, I am now encountering difficulties with creating associations. The current setup, including the adapter and `schema_…
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http://doi.org/10.1021/acs.jproteome.6b00618 (http://pubs.acs.org/doi/abs/10.1021/acs.jproteome.6b00618)
> Identifying interactions between known drugs and targets is a major challenge in drug repo…
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The "DB01296" drug is the first data in the "drug" table of dataset 1.
I searched on the DrugBank website, but the targets of this drug are only "P01579|Q04206", besides the enzyme does even not o…