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I am wondering if this tool works with genes with ENSEMBL IDs
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This Ensembl pipeline is probably one of the largest sources of incorrect IEA annotation.
One major issue that could be fixed is that the relationships appear to be ignored.
So in this case…
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### Aims/objectives.
Can we link to Ensembl genes _e.g._ http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000188157 ?
### A clear and concise description of todo items.
We need the …
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![image](https://github.com/user-attachments/assets/966bc4d5-481d-43e8-beaf-da3a5de35ca0)
I noticed that the "Ensembl Gene" link does not work for some species, and the link needs updating.
The…
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First of all thanks that more and more packages are available for arm64. `ensembl-vep` is available as `noarch`. However, it cannot be installed since neither `perl` nor `perl-bio-db-hts` is availble …
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### Description of the bug
Hi am working with the pipeline, in the test working fine. with samples do not report the VARIANT_CALLING, there is no error in the run.
How I can make that processes?
##…
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I am attempting to annotate genomic data based on GRCh37 using Ensembl version 75, as it is the only version suitable for my needs. However, Ensembl version 75 has differences compared to newer versio…
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Hi Eric,
When I try to run the ESPRESSO_Q.pl command, I encounter the following error message:
![bug](https://github.com/user-attachments/assets/be3cbd80-e55c-4ba8-ab96-a1c62e3f4bf0)
This is my r…
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It looks like there might be an issue with the processing of the uniprot-proteome-.nt files for 2.7. I noticed the size of many of the nt files has decreased from the 2.6 release.
According to the …
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Works without issue for all genes that I've tried:
```r
ensembl = useMart("ensembl", dataset = "hsapiens_gene_ensembl")
getSequence(
id = gene_id$ensembl_gene_id,
type = "ensembl_gene_i…