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I’m looking for gene prediction alternatives to MetaEuk that are less resource intensive for my VEBA software suite (https://github.com/jolespin/veba). With a cursory glance at the repo, it looks lik…
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I just noticed that when getting the biomes data as the relationship from a sample, it is different from the one from studies.
For instance in studies (https://wwwdev.ebi.ac.uk/metagenomics/api/v1/…
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Potential environmental databases we could pull from. (Linked API page where I could)
- [MGnify (formerly EBI Metagenomics)](https://www.ebi.ac.uk/metagenomics/api/docs/#/)
- [MG-RAST (metagenomic…
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We have a lot of training materials not listed here from DIBSI and other workshops outside of UCD. Wanting to share these materials with others (like people who come to MAD), but have to go hunt them …
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Dear GRiD Developers,
I'm getting the following error when I am running Grid Multiplex on the mice metagenomic data (from stool) using comprehensive GRiD database. However, I able to receive the ou…
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I am doing an experiment where we are testing 5 different ways to deplete host DNA on three types of low microbial biomass respiratory samples (sputum, nasal swabs, bronchoalveolar lavage) prior to de…
pslai updated
11 months ago
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I have been tasked with the creation of ENVO terms for the EBI biomes hierarchy, so that EBI which can better link to ENVO. They have major biome hierarcies for environmental, host-associated, and eng…
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I am all for wrappers, but currently we use them at one place, and we need to copy the wrappers directory to a relative location to the snakemake file. I think this is not very feasible, and we need t…
meren updated
7 years ago
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**New term details**
```
Term name - sex
Structured comment name - sex
Definition - the sex of the organism sequenced
Expected value -
Value syntax - {[termID]}|{text}
Example - female
Pack…