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BreakerLab
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dimpl
DIMPL: Discovery of Intergenic Motifs PipeLine
MIT License
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IGR database not accessible
#32
vohlhauser
opened
1 month ago
0
Genome IGR selection: Genome listed on Rfam cannot be accessed
#31
vohlhauser
opened
2 months ago
1
Nextflow Process: Download requested genome(s) from NCBI
#30
kenibrewer
opened
10 months ago
0
Nextflow Process: Extract IGRs and CDS
#29
kenibrewer
opened
10 months ago
0
Nextflow Workflow/Process: Build Search Database
#28
kenibrewer
opened
10 months ago
0
Add .devcontainer configuration files
#27
kenibrewer
opened
10 months ago
0
Replace Jupyter notebooks with Python CLI
#26
kenibrewer
opened
10 months ago
0
Transition HPC task building logic to Nextflow
#25
kenibrewer
opened
10 months ago
0
Rename default branch from master to main
#24
kenibrewer
opened
10 months ago
0
Manifest File
#23
JohnStatz
closed
2 years ago
4
Fixed an error when an accession number is in both ENV12 and RefSeq.
#22
ggaffield
closed
2 years ago
2
Genome_context.py issues
#21
slyyy312
closed
2 years ago
1
Revision release
#20
kenibrewer
closed
3 years ago
0
BugFix: Handle duplicate accession numbers are in the searched FASTA database.
#19
ggaffield
closed
3 years ago
0
Genome context display fixes and enhancements
#18
ggaffield
closed
3 years ago
0
fixcoords job runs until time expires
#17
ggaffield
closed
3 years ago
5
Added script that simplifies the user step of making a tar file
#16
ggaffield
closed
3 years ago
0
Moved scattered settings to a new central configuration file.
#15
ggaffield
closed
3 years ago
0
Env12
#14
ggaffield
closed
3 years ago
1
A couple path changes due to storage relocation on Yale Farnam cluster
#13
ggaffield
closed
3 years ago
0
BugFixes & Enhancements to infernal_run script
#12
ggaffield
closed
3 years ago
0
fixed errors in Notebook 3.
#11
mp2452
closed
3 years ago
0
Modified make_dataset.py script , download_genome function
#10
mp2452
closed
3 years ago
0
Bug Fix: some accession numbers missing from resulting bed file.
#9
ggaffield
closed
3 years ago
0
Bug fix: Typo ENTREZ_API should be ENTREZ_APIKEY
#8
ggaffield
closed
3 years ago
0
Fixed bug where coordinates were incorrectly reversed
#7
ggaffield
closed
3 years ago
0
Organize output from DIMPL results into subfolders
#6
kenibrewer
closed
10 months ago
1
Database Name in File Name
#5
snmalk
closed
10 months ago
3
Incorporate environmental databases into search
#4
snmalk
opened
4 years ago
3
Changed database to reflect using refseq98
#3
snmalk
closed
4 years ago
0
Clarified instructions
#2
snmalk
closed
4 years ago
0
New script
#1
ggaffield
closed
3 years ago
0