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In your github create tickets for the questionable enzymes. @mtiemeyer0919 will recruite some experts (#1260) to help with the resolving of these issues.
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## Describe the desired feature/enhancement
I'd like the ability to use many more restriction sites much like biopython's Restriction package.
### Is your feature request related to a problem?
…
rmcl updated
2 months ago
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### Description of feature
Currently, @timosachsenberg @jpfeuffer comet only support 'Asp-N,Chymotrypsin,CNBr,no cleavage,unspecific cleavage,Trypsin,Arg-C,Lys-C,Lys-N,PepsinA,Trypsin/P,glutamyl endo…
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Maybe try to set up a meeting?
Also ask if she has more contacts outside of the university who we could chat to?
Speakers for people running plants? What practicalities?
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Hi, it appears that I am encountering an issue while training a model on the syn-balanced and enzymes datasets.
In both cases, the training process seems to be running indefinitely, and the outputs…
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```
from Bio.Restriction import AatII, ZraI
from pydna.dseq import Dseq
s = Dseq("GACGTC")
s.cut(AatII)
# (Dseq(-5)
# GACGT
# C,
# Dseq(-5)
# C
# TGCAG)
s.cut(ZraI)
# (D…
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We would like to map the enzymes in Sandbox to reactions in Rhea. One possible pathway:
* Enzymes in Sandbox have UniProtAcc
* From UniProt get the EC number for this protein
* With the EC number w…
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Exploration Clearer visualization of relationships between structures & biosynthetic enzymes/pathways
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Hello,
I have KO samples for an enzyme responsible for m6A modification, and I have identified many m6A sites in these KO samples. I am currently analysing the entire sample library to quantify m6A s…
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Issues in lab 7:
- catalase/temperature directions do not include incubation time!
- bubble height measurement directions may be unclear?
- need to add molecular diagram illustrating enzyme activ…