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Hi @sokrypton and thanks for another great project,
No "issue" here, rather a question since I couldn't find it in this repo or the colabdesign one ...
Is there a way to get the residue embeddings…
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I've just run `scripts/install_third_party_dependencies.sh` and `python3 setup.py install`. No erros during the instalation. `resouces` folder was created inside openfold folder, but:
```
./script…
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**Describe the bug**
EvoFormer attention kernel test case fails non deterministically on H100s.
**To Reproduce**
Run,
`pytest -s tests/unit/ops/deepspeed4science/test_DS4Sci_EvoformerAttention.p…
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I am trying to finetune AF-multimer and I start with a mock dataset of just 3 proteins. I get the following error:
torch.cuda.OutOfMemoryError: CUDA out of memory. Tried to allocate 1.95 GiB. GPU 0…
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Hi,
This is regarding protein generation in DiG.
I wanted to know how you obtained the features present in the protein pickle files. As per Appendix B.1 of the paper, the single and pair represe…
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Creating a binder for this protein: https://alphafold.ebi.ac.uk/entry/Q8W3K0 and I'm getting this error both on T4's and A100's:
This error makes sense, but I'm confused as to how a protein that re…
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Just hoping someone has an idea of what might be going on, because I'm completely puzzled by this behavior.
After reducing "no_blocks" from 48 to 12 I get an OOM error. It's the only thing I change…
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make sure checkpointing works, or see if evoformer can be made reversible
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During model training, do you input the full-length sequence and then crop it or just input the cropped sequence?
In addition, I would like to ask if there are any ablation experiments of Geoformer…
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Hi there,
I am wondering whether I can use predicted structures as templates to speed up the multimer prediction.
Essentially, assume I have already predicted each chain individually and trying …