issues
search
sokrypton
/
ColabDesign
Making Protein Design accessible to all via Google Colab!
Other
632
stars
149
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Does is matter? ---- RSO notebook ERROR: 'i_pae' not found in ['seq_ent', 'plddt', 'pae', 'exp_res', 'helix']
#186
Samuel-gwb
opened
1 day ago
0
Template mode in AFcluster fails to retrieve pdb
#185
leonart3
opened
3 weeks ago
0
asymmetric inputs for `get_con_loss` inside `_loss_binder`
#184
pagpires
opened
1 month ago
0
mk_af_model.predict and localcolabfold
#183
vuhongai
opened
1 month ago
1
Fix sampling temperature parsing bug
#182
brennanaba
closed
1 month ago
0
ColabDesign RFdiffusion FileNotFoundError
#181
ttessie2
opened
1 month ago
3
ColabDesign license
#180
komatsuna-san
opened
1 month ago
4
options for ligandmpnn in colabdesign
#179
ShuhaoGithub
opened
2 months ago
0
WARNING: 'model_1_ptm' not found WARNING: 'model_2_ptm' not found
#178
wendi-luo
opened
4 months ago
0
The Fold Conditioning notebook seems to be broken
#177
ajasja
closed
3 weeks ago
6
I can't see prediction of cyclic peptide example
#176
kimdn
closed
1 month ago
6
error in cyclic design notebook
#175
overlord1647
opened
5 months ago
0
MMSEQ2 NCBI labels (how can we keep them)
#174
MishterBluesky
opened
5 months ago
0
Flash attention
#173
oliverdutton
opened
7 months ago
1
binders designed don't binds at the hotspots of the target chain.
#172
rocke2020
closed
3 months ago
0
Is it preferable for the "con" metric to have a smaller value during the optimization process?
#171
milkboylyf
opened
9 months ago
0
af_model.predict failing
#170
baptiste-roelens
closed
9 months ago
2
added offset typing
#169
stephen-rettie
closed
10 months ago
0
Update af_cyc_design.ipynb
#168
stephen-rettie
closed
10 months ago
0
mk_af_model: refolding a sequence of a experimental structure using said structure as a template performs miserably
#167
dandaman
closed
10 months ago
2
adding changes from gamma_0 to gamma_1
#166
sokrypton
closed
10 months ago
0
converting other MPNN checkpoints for support in ColabDesign and JAX
#165
adrienchaton
opened
11 months ago
8
XlaRuntimeError: FAILED_PRECONDITION: DNN library initialization failed.
#164
johnnytam100
closed
11 months ago
1
minor cleanup and add support for drmsd
#163
sokrypton
opened
1 year ago
0
Locally Run ColabDesign
#162
Leo-T-Zang
opened
1 year ago
0
Is the "i_pae" score in the designability_test.py the same as pAE_interaction?
#161
SantiagoMille
opened
1 year ago
0
Can af_cyc_design generate cyclic pepitide with D-Amino acid
#160
yrq3027
opened
1 year ago
1
adding support for pseudo_multimer
#159
sokrypton
closed
1 year ago
0
Contigs messed up with partial diffusion and manual symmetry
#158
ali-j-scott
opened
1 year ago
0
How to continue a design run?
#157
amin-sagar
opened
1 year ago
0
Partially folding a structure using AF
#156
aravinda1879
opened
1 year ago
0
fix_pos in af/fixbb
#155
dandaman
opened
1 year ago
2
Adding solubleMPNN weights
#154
KeaunAmani
closed
1 year ago
0
Do the soft iterations in pssm_semigreedy obey the bias matrix
#153
amin-sagar
opened
1 year ago
0
Is it possible to bypass the design step of AfDesign?
#152
johnnytam100
opened
1 year ago
0
merge
#151
sokrypton
closed
1 year ago
0
Refactor Partial
#150
sokrypton
closed
1 year ago
0
Beta
#149
sokrypton
opened
1 year ago
0
bugfix MSA input
#148
sokrypton
closed
1 year ago
0
adding ability to finetune alphafold params
#147
sokrypton
closed
1 year ago
0
refactoring dgram recycling
#146
sokrypton
closed
1 year ago
0
How to get PAE files when running RFdiffusion
#145
remybonnav
opened
1 year ago
0
Translate colab for RFdiffusion to a jupyter notebook?
#144
remybonnav
opened
1 year ago
0
Allow to select the Complex_beta_ckpt model in RFdiffusion colab?
#143
remybonnav
opened
1 year ago
0
Patch fix_partial_contigs when residue numbering in PDB has a gap
#142
data2code
opened
1 year ago
2
MPNN designed sequence not separated correctly with multiple targets and multiple binders
#141
data2code
opened
1 year ago
2
Any plans to add af2seq to the colab design
#140
Lyang556
opened
1 year ago
0
atom index in af.prep.prep_pdb
#139
data2code
opened
1 year ago
1
V1.1.1
#138
sokrypton
closed
1 year ago
0
minor edits
#137
sokrypton
closed
1 year ago
0
Next