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sokrypton
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ColabDesign
Making Protein Design accessible to all via Google Colab!
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WARNING: 'model_1_ptm' not found
#128
DomML
closed
1 year ago
1
minor edits
#127
sokrypton
closed
1 year ago
0
Problem in designability_test.py
#126
suknamgoong1970
closed
1 year ago
2
How to predict the Cyclic Peptide's structure by a given sequence
#125
aar-d-vark
opened
1 year ago
3
The sequence in design.fasta is different from the sequence in best.pdb
#124
Lyang556
closed
1 year ago
5
Can we see generated sequences other than final one?
#123
Hyunjoo-ibs
opened
1 year ago
1
critical typo in kmeans.py (simport instead of import)
#122
jkosinski
opened
1 year ago
1
V1.1.1 beta
#121
sokrypton
closed
1 year ago
0
Minimize sequence length while preserving some amount of structural stability.
#120
seyonechithrananda
opened
1 year ago
0
how to interpret results of 'use_templates=True' versus 'False' in partial_hallucination_rewire?
#119
genya
opened
1 year ago
1
V1.1.1
#118
sokrypton
closed
1 year ago
0
V1.1.1 beta
#117
sokrypton
closed
1 year ago
0
OOM on AF DB proteins?
#116
Abhishaike
opened
1 year ago
2
small fix required for newer numpy versions
#115
gieses
opened
1 year ago
0
Update plot.py
#114
szho42
closed
1 year ago
0
why colabdesign alphafold limits on insertion code at chain
#113
rocke2020
closed
7 months ago
0
git clone error
#112
biotech70
opened
1 year ago
2
adding mlm support
#111
sokrypton
closed
1 year ago
0
V1.1.1
#110
sokrypton
closed
1 year ago
0
How to use gpu or cuda for design binder
#109
cloudaner115
opened
1 year ago
1
V1.1.0
#108
sokrypton
closed
1 year ago
0
Fix sequence at certain positions in Binder protocol
#107
aminsagar
opened
1 year ago
8
fixing TrDesign bug (best result not saved)
#106
sokrypton
closed
1 year ago
0
V1.1.0
#105
sokrypton
closed
1 year ago
0
Update README.md
#104
sokrypton
closed
1 year ago
0
updating plddt and pae loss calculation to consistent with the reported plddt and pae outputs
#103
sokrypton
closed
1 year ago
0
difference between plddt in the log and in the saved PDB!
#102
shahmandi
closed
1 year ago
2
V1.1.0
#101
sokrypton
closed
1 year ago
0
V1.1.0
#100
sokrypton
closed
1 year ago
0
V1.1.0
#99
sokrypton
closed
1 year ago
0
out of memory for partial hallucination
#98
17dacheng
opened
1 year ago
2
'mk_af_model' object has no attribute 'aux'
#97
17dacheng
closed
1 year ago
6
Homooligomer design in ProteinMPNN
#96
alessandronascimento
closed
1 year ago
2
How to design more binders
#95
Lyang556
closed
1 year ago
2
v1.1.0
#94
sokrypton
closed
1 year ago
0
Out of memory error
#93
bethleegy
opened
1 year ago
4
minor edits
#92
sokrypton
closed
1 year ago
0
cleanup
#91
sokrypton
closed
1 year ago
0
minor edits
#90
sokrypton
closed
1 year ago
0
mpnn cleanup
#89
sokrypton
closed
1 year ago
0
v1.1.0
#88
sokrypton
closed
1 year ago
0
Sidechain rmsd loss throws out error
#87
ardagoreci
closed
1 year ago
2
Add seed
#86
phiweger
closed
1 year ago
2
pLDDT increases and then decreases during the soft iterations
#85
victorconan
opened
1 year ago
8
refactoring the optimization code to use optax library
#84
sokrypton
closed
1 year ago
0
refactoring the GD optimization code
#83
sokrypton
closed
1 year ago
0
expanding callback functions
#82
sokrypton
closed
1 year ago
0
Alpha
#81
sokrypton
closed
1 year ago
0
cleaning up code, bugfixes
#80
sokrypton
closed
1 year ago
0
updating alpha
#79
sokrypton
closed
1 year ago
0
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