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sokrypton
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ColabDesign
Making Protein Design accessible to all via Google Colab!
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options for ligandmpnn in colabdesign
#179
ShuhaoGithub
opened
4 days ago
0
WARNING: 'model_1_ptm' not found WARNING: 'model_2_ptm' not found
#178
wendi-luo
opened
2 months ago
0
The Fold Conditioning notebook seems to be broken
#177
ajasja
opened
2 months ago
0
I can't see prediction of cyclic peptide example
#176
kimdn
opened
2 months ago
0
error in cyclic design notebook
#175
overlord1647
opened
2 months ago
0
MMSEQ2 NCBI labels (how can we keep them)
#174
MishterBluesky
opened
3 months ago
0
Flash attention
#173
oliverdutton
opened
4 months ago
1
binders designed don't binds at the hotspots of the target chain.
#172
rocke2020
closed
1 month ago
0
Is it preferable for the "con" metric to have a smaller value during the optimization process?
#171
milkboylyf
opened
6 months ago
0
af_model.predict failing
#170
baptiste-roelens
closed
7 months ago
2
added offset typing
#169
stephen-rettie
closed
7 months ago
0
Update af_cyc_design.ipynb
#168
stephen-rettie
closed
7 months ago
0
mk_af_model: refolding a sequence of a experimental structure using said structure as a template performs miserably
#167
dandaman
closed
7 months ago
2
adding changes from gamma_0 to gamma_1
#166
sokrypton
closed
7 months ago
0
converting other MPNN checkpoints for support in ColabDesign and JAX
#165
adrienchaton
opened
9 months ago
8
XlaRuntimeError: FAILED_PRECONDITION: DNN library initialization failed.
#164
johnnytam100
closed
9 months ago
1
minor cleanup and add support for drmsd
#163
sokrypton
opened
9 months ago
0
Locally Run ColabDesign
#162
Leo-T-Zang
opened
10 months ago
0
Is the "i_pae" score in the designability_test.py the same as pAE_interaction?
#161
SantiagoMille
opened
11 months ago
0
Can af_cyc_design generate cyclic pepitide with D-Amino acid
#160
yrq3027
opened
11 months ago
1
adding support for pseudo_multimer
#159
sokrypton
closed
11 months ago
0
Contigs messed up with partial diffusion and manual symmetry
#158
ali-j-scott
opened
1 year ago
0
How to continue a design run?
#157
amin-sagar
opened
1 year ago
0
Partially folding a structure using AF
#156
aravinda1879
opened
1 year ago
0
fix_pos in af/fixbb
#155
dandaman
opened
1 year ago
2
Adding solubleMPNN weights
#154
KeaunAmani
closed
1 year ago
0
Do the soft iterations in pssm_semigreedy obey the bias matrix
#153
amin-sagar
opened
1 year ago
0
Is it possible to bypass the design step of AfDesign?
#152
johnnytam100
opened
1 year ago
0
merge
#151
sokrypton
closed
1 year ago
0
Refactor Partial
#150
sokrypton
closed
1 year ago
0
Beta
#149
sokrypton
opened
1 year ago
0
bugfix MSA input
#148
sokrypton
closed
1 year ago
0
adding ability to finetune alphafold params
#147
sokrypton
closed
1 year ago
0
refactoring dgram recycling
#146
sokrypton
closed
1 year ago
0
How to get PAE files when running RFdiffusion
#145
remybonnav
opened
1 year ago
0
Translate colab for RFdiffusion to a jupyter notebook?
#144
remybonnav
opened
1 year ago
0
Allow to select the Complex_beta_ckpt model in RFdiffusion colab?
#143
remybonnav
opened
1 year ago
0
Patch fix_partial_contigs when residue numbering in PDB has a gap
#142
data2code
opened
1 year ago
2
MPNN designed sequence not separated correctly with multiple targets and multiple binders
#141
data2code
opened
1 year ago
2
Any plans to add af2seq to the colab design
#140
Lyang556
opened
1 year ago
0
atom index in af.prep.prep_pdb
#139
data2code
opened
1 year ago
1
V1.1.1
#138
sokrypton
closed
1 year ago
0
minor edits
#137
sokrypton
closed
1 year ago
0
minor edits
#136
sokrypton
closed
1 year ago
0
where is the output file when finish the model.design_3stage() run?
#135
zzy221127
opened
1 year ago
1
V1.1.1
#134
sokrypton
closed
1 year ago
0
Revert "merge"
#133
sokrypton
closed
1 year ago
0
merge
#132
sokrypton
closed
1 year ago
0
Using RFdiffusion to design a binder, with some parts of the binder fixed
#131
KoubaPetr
opened
1 year ago
6
fix dgl for rfdiffusion
#130
sokrypton
closed
1 year ago
0
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