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hello,
i am screening the minion generated sequences of bacterial genome and getting these results. even after geeting killed the sequences are showing hits on these genomes. is it running properly?…
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While running following command
nextflow run main_AMR++.nf -profile conda
N E X T F L O W ~ version 24.04.3
Launching `main_AMR++.nf` [elegant_gauss] DSL2 - revision: f6bfe39b99
A M R …
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# Issue Report
## Please describe the issue:
Hi, I am trying to re-align sequencing results from an adaptive sampling experiment. So I want to run dorado aligner on the fastq_pass/ directory
Th…
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### Ask away!
Hello,
I ran a prepared library of 9 rAAV samples on a MinION flowcell and would like to use the wf-aav-qc workflow to analyze the fastq data. I have successfully used the workflow …
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**Is your feature request related to a problem? Please describe.**
Projects with many samples can produce a large amount of data in one measurement.
To analyse effects only observed in a subset of…
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Reported by @beatrizsavinhas
Analyses for cases in which `data_delivery` includes `fastq` or `analysis` still receive an `uploaded_at` date even when the rsync job fails. Effectively, the upload fa…
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### Ask away!
Hello,
I am trying to get the demo model to work using the following script on HPC and I get a couple of error Plus 4 more processes waiting for tasks…
Doing reference based transcr…
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Hi, I am using stringMLST and I noticed that I got different results for running the same sample more than once. The database changed (updated). What was surprising that some of the assigned ST's in t…
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### Description of the bug
Hi,
I have been using nf-core/rnasq for a long time, but with the update of Nextflow, I am receiving the following error messages. I downloaded my fastq files with asper…
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### Description
For human DNA samples customers can order different analysis workflow but they can also order sequencing only (FASTQ) where we just send them the FASTQ files.
This option does not …