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Hello,
I am running nf-core/sarek on Ubuntu 22.04.3 LTS (GNU/Linux 5.15.153.1-microsoft-standard-WSL2 x86_64). I encountered the error: "Process exceeded running time limit (8h)." To address this, …
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Hello! I'm trying to run FastQC on a group of ~1000 fastq files. I am able to get the GUI to work, but whenever I try to run the command from the Windows command line, I get the error: 'fastqc' is not…
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From the tutorial "Introduction to Genome Assembly" I Couldn't get beyond this part;
![Screenshot_20211014-235710~2](https://user-images.githubusercontent.com/78880128/137407769-4184b934-1f1d-4d6f-8b…
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I updated the admin stats queries to get the user and usage stats for all time and last 5 years to the date 2024-08-31. Xref: https://github.com/usegalaxy-eu/issues/issues/598
This will provide con…
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### Description of the bug
Hi,
I have been using nf-core/rnasq for a long time, but with the update of Nextflow, I am receiving the following error messages. I downloaded my fastq files with asper…
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Nextflow 22.04 brings with it two new features which should give much cleaner syntax for collecting tool versions: channel topics using `topic` (see https://github.com/nf-core/modules/issues/4517) and…
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### Description of the bug
Hey!
I was running the nascent pipeline v2.2.0 on two replicates of the same sample, and encountered the following error at the step of FASTQC:
```
Aug-14 10:33:55.2…
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Look into whether there's any magic that we can do to try to automate updates in the v3 release of the template.
* nf-schema migration ([docs](https://nextflow-io.github.io/nf-schema/latest/migration…
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reported by @bethsecor