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### Description
HI. Thank you for your wonderful workong! I was wondering if there are any plans to implement FDR correction in the future? FDR correction is more commonly used and popular compared t…
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Hi authors,
I am wondering what metric could be used to compare the same peak-to-gene linkage across different cell types? According to the tutorial, "the Shapley values converted to z-score are an…
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hello, good software, easy to use until I can not find q value settings, there is no option for setting q value or FDR threshold for final quality control of the results, or did I miss it ? I check ev…
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Thanks for the updates and for providing the community with free exceptional software.
In my testing of diann-linux v1.9.1 it always crashes when writing the manifest file and no manifest file is w…
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Hi,
Is there any way to estimate FDR values >.20 more precisely?
I can accept that my results aren't significant, but ALL 1300 geneset, tissue enrichment, or gene prioritization FDR estimates are…
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Thank you for the amazing contribution of DIANN. I am picking up on the recent release of diaTracer through FragPipe and am working off of their included peptidomics workflow that builds a single libr…
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Ciao, vi scrivo in merito ai campi in oggetto per l'invio fdr REST, con mappatura all'attuale servizio SOAP; di seguito SANP 3.7.1 in merito:
receiverReceiver (object)
id string
[XML FlussoRive…
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When we run FIRE_v0.06, we noticed different peak counts displayed in the 'FDR-peaks/peaks-vs-percent.pdf' that do not match one another and also do not match FDR-FIRE.bed.gz. The numbers are usually …
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Hi,
Thank you so much for creating such a wonderful bioinformatic tool.
I ran FIRE (v0.06) on the same bam file (hiphase output) twice with exactly the same environment/script, and the number of …
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Hi Fengchao,
Hope you are well. I had an error see below, Do you suggest changing the fdr from 0.01 to 0.05 in the "fdr filter and report"section of the "validation tab" and if so is this okay.
ER…