perslab depict issues - Githubissues

perslab / depict

DEPICT code, instructions and an example

GNU General Public License v3.0

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issues

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modify r2 to 0.05, the program has been running for a week

#29 koujiaodahan opened 3 weeks ago
0
is plink2 suitable as plink_executable?

#28 koujiaodahan opened 1 month ago
0
OSError: [Errno 13] Permission denied

#27 AlexYiLuo opened 1 year ago
1
Unable to open link to download reconsituted gene set

#26 sn-GT opened 1 year ago
2
\nCreating directory were results will be saved ({})".format(analysis_path)

#25 bujnism closed 1 year ago
0
File missing

#24 AizawaKakeru opened 1 year ago
0
DEPICT v1.194 is no longer available (broken link)

#23 ghost opened 2 years ago
0
fixing the seed

#22 sespesogil opened 3 years ago
0
Run depict with data of genome build hg38

#21 kkhchan opened 3 years ago
0
No backgrounds have been precomputed

#20 kkhchan opened 3 years ago
0
Using different tissue gene expression file in DEPICT

#19 kkdey opened 4 years ago
1
DEPICT LOO mode not working

#18 miaokyle opened 4 years ago
0
ArrayIndexOutOfBoundsException

#17 miaokyle opened 4 years ago
0
Errors retrieving background loci

#16 lawchen opened 4 years ago
3
DEPICT not working with results from HRC imputed data

#15 oyhel opened 4 years ago
0
something is wrong when input "$ depict.py ./software/depict/example/ldl_teslovich_nature2010.cfg "

#14 Z199486H opened 5 years ago
1
Number of permutation files are insufficient

#13 ZKamali closed 5 years ago
1
Updated readme to include additional points to change in .cfg

#12 rkita opened 5 years ago
0
Further changes to depict_library.py is required

#11 jinghuazhao opened 6 years ago
0
network_plot.py issue

#10 jinghuazhao closed 6 years ago
1
Pandas 0.17 has deprecated DataFrame.sort()

#9 fladi opened 6 years ago
0
Some data resource are missing

#8 Bochao1 opened 7 years ago
1
No backgrounds have be precomputed for # yet

#7 MikeDacre opened 7 years ago
2
Broken link

#6 zx8754 opened 7 years ago
0
Depict v1 rel194 download archive seems to be missing data!

#5 mverkerk opened 7 years ago
0
FDR values

#4 petralenzini opened 7 years ago
1
Exception / failure when number of unique loci exceeds 1000

#3 Skybeetle closed 8 years ago
2
Same handling of gzipped and not gzipped files

#2 jbethune closed 9 years ago
0
Update README.md

#1 tunepers closed 9 years ago
0