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Hi Kai,
thanks for your tool on cross-ancestry fine-mapping!
Currently I'm trying to do cross-ancestry fine-mapping for two ancestries and both GWASs are performed with the same set of covaria…
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In the ’get_fine_ds_match function‘ of fine_matching.py, there is a - W // 2 operation when calculating mkpts0_c, which seems to assume that the initial mkpts0_c is at the center of the current croppe…
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The scripts and steps followed to run susie using in-sample LD on the meta-analysis GWAS results:
- Computing LD and converting to matrix format for running SUSIE (Fri, 23:37, 21-Jun-24).
- Susie…
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I'm trying to estimate parameters for finemapping and for some reason I the first iteration estimates the gene prior to be zero:
```
ctwas::ctwas_rss(
z_gene = z_gene_subset,
…
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We were recommended to use locus breaker working with MLOG10P in COJO pipe rather than the original one.
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Hello,
Thank you for the fantastic package! I've tried with a VLP16 and it worked in real-time nicely.
However, I am exploring the different parameters available. In particular, can I make the r…
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Since for `susie_rss()` (for GWAS data integration, not for xQTL where we use `susie()`) we decide to use the `polyfun::finemapper.py` wrapper, we can implement the FINEMAP method in it for free (`--m…
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I can see that the app is using the search api to resolve Finicity institutions but looking at the response I can see that the mapping is off.
Current `finbank` resolve response:
```javascript
{
…
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**Developer TODO (don't remove)**
- [ ] update documentation
This app is great, but it seems like the developers had a derp moment with regard to all the complicatioms surrounding keyboards.
Cu…
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Dear Team,
I am trying to run the fine-mapping-inf. Thanks for the fantastic software.
I have used the command below to generate LD files.
plink --bfile /gpfs/scratch/najeeb/VCFAfilesAnnotat…