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Hi there,
Thank you again for creating this wonderful tool! I had a question regarding your fusion gene analysis in your recent biorxiv paper: https://www.biorxiv.org/content/10.1101/2021.04.21.440…
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I tested on the test dataset of nextneopi (https://github.com/icbi-lab/nextNEOpi). I has a similar session for using the arriba to get the fusion genes. From those fusion genes, it can get the peptide…
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Objectives of the tool:
- Create a subdirectory to store the essential information (files) needed for review
- Create a Tiered and Annotated report table that makes it more clear which fusion cand…
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Wicked fast indeed! Are there any plans to extend salmon to also detect gene fusion events? There isn't a fast and accurate way to do that yet, only approaches requiring full alignments. Most often a …
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Hello, are there any plans to also include gene fusion detection in Hisat2, or will that be left to other tools working on the output Samfiles?
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I am investigating many fusions and have created a list of fusion candidates containing 1974 fusions. Of these, one of them is a true positive, also called by star fusions correctly. However, FusionIn…
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Hi there. When trying to focus it keeps reporting the error "502 Server Error: bad gateway for url: http://mygene.info/v3/query/", I have tried running it at different times but it still gives this er…
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Hi All,
We have performed STAR and STAR-Fusion on your RNA-Seq datasets and encountered conflicting results, particularly regarding the read counts. Our results show significantly more junction rea…
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Hi, Sigven, Now PCGR can analysis SNV/INDEl and CNA. would you like to add gene fusion function in the future?
Another question is that given tumor/normal raw data(fastq), can you recommend some pi…
pl618 updated
10 months ago
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Hi Val.
I've found that there are three ways that fusions are annotated. For implementing pombase/pombase-chado#993 it would be helpful to standardise.
SPAC1782.04/cox24 is like this with "(C-t…