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Hi Jayson,
In the expression table panel, it would be useful if the _feature_ field could be rendered as a URL, where feature name (often a gene symbol or a genome coordinate) would be pasted to a ba…
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I find it useful to see the absolute genomic coordinates when working with large chucks of DNA and even with genes, for instance, when working in parallel with other tools such as genome browsers or B…
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[string_serialization](https://linkml.io/linkml-model/latest/docs/string_serialization/) isn't actionable like `range` or `pattern`. It's intended as a hint for how a software agent might want to popu…
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I would like to suggest a feature where you have a BED output file, one per genome.
It has the advantages that
* Can be put into most genome browsers like IGV.
* Makes it easier to overlay wi…
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Hi Jody,
The VCF produced by TbProfiler v6.3 violates the VCF v4.2 specification which might cause issues with parser and genome browsers. TbProfiler reports GQ values as Floats but the specificati…
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Discussion: Do we want to put up browsers or just host genes?
(1) nigra: https://treegenesdb.org/FTP/Genomes/Juni/
(2) hindsii: https://treegenesdb.org/FTP/Genomes/Juhi/
(3) sigillata: https://t…
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support modbam output for viewing modifications in genome browsers
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Key points for introduction:
- What are genome annotations? What type of features are included in genome annotations (protein-coding genes, pseudogenes, RNAs etc)? What sorts of things do biologists …
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Found dalliance and DAS while looking around for genome browsers, and it's definitely the coolest-looking one I've found. However, despite billing itself as a general purpose genome browser, it seems…
kueda updated
13 years ago
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Well, the tool is really wonderful. But after I get the JSON file, how to use it with genome browsers such as IGV, Biodiance, JBrowse?