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Hi,
I got the output from gemma with the -gxe flag, and I'm getting one pvalue column. Does this value correspond to the interaction term? If so, how can I get the pvalues for the genotype and envi…
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There is an error on line 95. When you simulate environments as correlated traits you shouldn't also add varGxE = rep(2, nEnv), as this will add extra (spurious) error to the phenotypes. It will also …
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after running code like this, the result of some SNPs are NA, here I included 10 PCs here, and include interaction between each SNPs with those 10 PCs. When I only include interaction of SNP with 2 PC…
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Hi there,
Sorry, this is my first time posting an issue for an R package so I am unsure what is standard protocol. If you need me to submit a full markdown file then I could probably do that.
I …
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**Is your feature request related to a problem? Please describe.**
The 1 covariate GxE model in AlphaSimR results in some extreme differences in the spread of traits at extreme values of the covariat…
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**Describe the bug**
If I try to subclass a check to define a certain customizable behavior, everything goes well so long as I keep the original name for the input variable. However, if I add an alia…
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Hi all, thanks for the great work in GEMMA.
I'm trying to do an analysis with a bim genotype file, a phenotype file, and a GxE file. This is the Linux command line:
`~/tools/GEMMA/bin/gemma -g tes…
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Hi,
In the TrajGWAS documentation (https://openmendel.github.io/TrajGWAS.jl/dev/#GxE-or-other-interactions), the p-value file from jointly testing for G + G*E using the formula testformula=@formula…
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# config set notify-keyspace-events gxE
return a error
(error) ERR CONFIG subcommand must be one of GET