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When a job produces a file, we should have a link to such files from the HistomicsTK interface.
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[Here](https://distributed.readthedocs.io/en/latest/setup.html) is some info on how to setup a Dask cluster
Once the cluster is setup, the cluster scheduler address can then be passed to Slicer CLI…
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Thanks for developing this amazing piece of opensource software. It has helped us a lot and we are actively using it as the basis of our UI.
One of the features that can add a lot of flexibility to…
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Currently there isn't a documented method to easily migrate one deployment to another (as far as I'm aware). I recently ran into a problem where I had to tear down a deployment and move to another, bu…
kwsp updated
9 months ago
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at the moment the [virtual folder plugin](https://github.com/girder/girder/blob/master/plugins/virtual_folders/girder_virtual_folders) injects itself just to the REST API of a folder. However, when us…
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Since rasterio released v 1.3.11 ~10 hours ago, HistomicsTK installation is failing. Maybe a wheels problem? Any idea why and how to fix it?
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I had an web-viewer based on OpenSeadragon, and I would like to combine the viewer with HistomicsTK and girder to better analysis and manage the whole slide images. It said large image is overlaid wit…
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Great package! When trying to run
```
model, loss = utils.run_starfysh(visium_args,
n_repeats=n_repeats,
epochs=epochs,
…
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see https://github.com/girder/girder_worker/pull/97
At least provide the option to set up cron jobs at some scheduled interval to call Docker GC.
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New histomicstk user here. Trying to add histomicstk modules to an existing image analysis pipeline and running into a dead end in a digital slide archive tutorial. Any solutions/advice would be much …