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Hi,
Thanks for this useful tool! I tried to apply Cytocipher to my data but got an error in step `cc.tl.merge_clusters`
```py
Cell In[10], line 1
----> 1 cc.tl.merge_clusters(rna, new_anno, n_…
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In the preliminary version of the practical 1, I try to cover following topics:
- [ ] Introduction to Imaging-Based Spatial Transcriptomics (Xenium Platform)
- Overview of Xenium technology and it…
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### Please link to the GitHub Discussion for this proposed analysis.
https://github.com/AlexsLemonade/OpenScPCA-analysis/discussions/583
### Describe the goals of this analysis module.
This analysi…
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Hi @danielsf,
I'm creating a new thread here, so we can continue our conversation regarding the marker genes that are used during the mapping process.
I followed your instructions in #10 in orde…
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From Chris Shults (+ my edits for gEAR purposes)
gEAR would be most useful for users to compare their scRNASeq or scATACSeq data to for cell annotation. They should directly take the unlabeled clus…
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I would like top propose the addition of marker gene expression assertions from analysis of the Human Lung Cell Atlas data to definitions of 52 existing CL terms with predicate skos:exactMatch. See a…
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### Please link to the GitHub Discussion for this proposed analysis.
https://github.com/AlexsLemonade/OpenScPCA-analysis/discussions/635#discussioncomment-10140478
### Describe the goals of this ana…
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We will generate a new Cell Marker ODK repo to manage markers for CL & CL-KG : - cellmark
The first aim for this repo will be to generate NS-Forest markers following standard patterns developed for…
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### If you are filing this issue based on a specific GitHub Discussion, please link to the relevant Discussion.
#292
### Describe the goals of the changes to the analysis module.
Now that we have …
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I'd like to see my data in the xeniumexplorer since you guys have already made the function(very cool!)
Is the function working or is it still in development?
Couple of questions:
What is the s…