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Hello, is there any documentation detailing how to train new models?
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Currently, when MS2PIPFeatureGenerator calls ms2pip.correlate(), the latter may download xgboost_models_files from the Internet if they are not present in the model_dir directory. Can we please have a…
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Currently (ms2rescore 3.0.3), MS2PIPFeatureGenerator has some code to provide a progress bar when running in a terminal. It's done using rich.progress.track. DeepLCFeatureGenerator seems to not use it…
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Hi Ralf,
I'm currently using MS2PIP to predict a spectral library for DIA-NN analysis. I obtained a '.msp' file and loaded it into the 'spectral library' of the DIA-NN GUI. But DIA-NN does not supp…
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> Hi Ralf,
>
> I tried the new features today and they seem to work. However, when I set more than one cpu in the config file, the process seems to get stuck in the multiprocessing step at the very…
RalfG updated
1 month ago
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Hi,
I tried to run MS2PIP v.3.6.1 from the command line in Ubuntu 18.04. I supplied the config text file and the .peprec file like this when I ran the command:
`ms2pip -c config_ms2pip.txt -n …
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Hello,
Thanks for the great tool, I am using MaxQuant and had been successfully running through a few datasets, but this time, when applied to a new dataset, it got stalled in the MS2PIP feature ge…
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So there is some need to think about in silico MS/MS from a variety of proteomics and metabolomics sources. With real data, there is no need to think about parameters in generation because the data is…
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I thought this idea was large enough where it should be it's own issue even though it's part of #1124 .
@acesnik wants some HTML reports and I think a lot of users really want some way to easily/gr…
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Hello, I get an SSL certificate error when trying to run the program, most probably from my network. Does ms2rescore send or receive data from other servers? Can this be disabled?
```
ERROR ms…
prvst updated
1 month ago