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Hi, I want to assemble a final set of transcripts from multiple tissues, But I have a question. Should I first assemble transcripts for each sample, then merge the transcripts from the same tissue? Or…
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Hi @VPetukhov
I ran baysor with the following parameters:
`-m 50 -p --prior-segmentation-confidence 0.2 --scale-std 0.8 --scale 5 --save-polygons GeoJSON `
I see the cell boundaries are drawn …
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A1BG_cross = ov.multi_join({"umich proteomics": "A1BG", "bcm transcriptomics": "A1BG"})
Trace
AttributeError Traceback (most recent call last)
Cell In[17], [line 1](vsc…
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Hi!
I am currently using the --ref-ld-chr-cts option to perform S-LDSC analysis, and I have a few questions:
1. The output of my analysis only includes the columns Name, Coefficient, Coefficient_s…
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Hi @matteofrigo @rutgerfick We are trying to follow this example: (https://nbviewer.jupyter.org/github/AthenaEPI/dmipy/blob/master/examples/example_multi_compartment_spherical_mean_technique.ipynb) bu…
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@rutgerfick We are trying to run a multi-tissue, multi-compartment SMT model, with the classic stick and zeppelin bundled together, and tortuosity and equality constraints included. We have precalcu…
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In order to bring the development stage branch of the PO in line with the anatomical entity stage branch of the PO, we need some new upper level terms. This is one of them.
proposed def.: A plant str…
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@matteofrigo @rutgerfick In your example for NODDI Watson (https://nbviewer.jupyter.org/github/AthenaEPI/dmipy/blob/master/examples/example_noddi_watson.ipynb) at the very end you explain that to get …
TMNir updated
3 years ago
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Hi @matteofrigo @rutgerfick
As mentioned before we are cascading a full ICVF map into a multi-tissue MCMDI 3 compartment model. We are inputting the tissue responses which are in the range of the ori…
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Dear Dr. Ryan Cabeen,
I am a beginner of Quantitative Imaging Toolkit (QIT) and diffusion data-related analysis. Recently, while conducting diffusion data analysis, I learned from literature that t…