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What do we need to prepare ss3diags to nmfs-ost repository
- [ ] Clean up existing issues
- [ ] Merge fixes to #95 (Resolve PR issues #107)
- [ ] Resolve #106
- [x] Fix r4ss 1.50 depend…
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Hi! Thanks for the great tool! Could GeneNMF be applied to 10x visium data ?
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From @aksarkar:
> I found that `fit_poisson_nmf` spends almost all of its time in single-threaded code, specifically `cost` and in `poisson_nmf_kkt`. One obvious enhancement would be to move the ob…
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### Problem
In `main`, 4 figures and .json/.csv are generated below:
```python
fig1 = nmf.component_plot(df_components, args1.xrd, args1.x_units, args1.show)
fig2 = nmf.component_rati…
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### Problem
The current package does not provide example data while the main app below requires `input_directory`
```
def main():
args = create_parser()
if args.input_directory is Non…
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Hi All!
It’s exciting to start our Fall 2024 NMFS Openscapes Champions Cohorts and meet you all in Zoom! Thank you to the AFSC Marine Mammal Lab Stock Assessment Reports team for sharing their stor…
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> ## Input:
# Genes_nmf_w_basis is a list in which each entry contains NMF gene-scores of a single sample. In our study we ran NMF using ranks 4-9 on the top 7000 genes in each sample. Hence each ent…
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## Background
We have R packages on public repositories on GitHub Enterprise. SAML is turned on. But the repos are fully public and there are no restrictions to downloading, cloning or forking. But…
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Look into torch.compile again
Figure out some way to make the model as fast as we reasonably can.
This is not currently a blocker, but if we don't pursue it, somebody else will come out with a f…
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as appears in nmfs cohort C Call 1 agenda