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Do we need more options to control the MRDS parameters?
- isotropic volume fraction prior needed? How is it set? What is the assumption?
- diffusivity ranges for the tensors?
Maybe checkout the …
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- The current NODDI step using dmipy is too slow
- It should be possible to choose between Watson and Bingham NODDI
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The [NODDI step in the pipeline](https://github.com/brain-microstructure-explo…
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Hi @mattcieslak ,
I was running the `amico_noddi` recon pipeline. The NIFTI files get written but the process appears to have stalled and has been in the same spot for the last 12 hours:
```
22…
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hello，I am very interested in generating fiber bundles and I would like to use NODDI's Watson to generate fiber bundles,
Dear, do you have an example of how to use FODS combined with DIPY to generate…
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Relies on #2 being done
Feel free to use the "convert to issue" feature on these tasks to break them out into dedicated discussions or track
separately.
- [ ] #15
- A sort of compatibility…
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We were able to get slicer version of UKF Tractography with --NODDI option to work well on Linux but
with the same data, the --NODDI option will crash using MACOS version. The 2 tensor model works …
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Hi,
I have some noddi data acquired at bvalues of 700 and 2000. They were acquired in separate sequences one after another - they have been processed identically for distortion and eddy corrections…
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issue copied from email from Faye McKenna.
> I am using the Noddi-Bingham model (https://github.com/AthenaEPI/dmipy/blob/master/examples/example_noddi_bingham.ipynb) and see that the code outputs s…
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Dear experts,
I was reading a post about the [optimal parallel diffusivity](https://github.com/daducci/AMICO/issues/114#issuecomment-881552431) and I was wondering if the approach of fitting by usi…
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I'm running qsiprep with --recon-only using docker.
I noticed that when the docker command gets executed, both the -w as well as the --bids-filter-file sometimes revert to the default value despite o…