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Hi,
I got following errors when compiling Look4LTRs, is there some bug in chromosometest?
Best,
Kun
```
[ 88%] Linking CXX executable look4ltrs
[ 88%] Built target look4ltrs
Scanning depe…
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Hi Jeremy--
Many thanks for helping me out with the uploading of files to the Virtual Box. I've managed to figure that out.
I was doing a preliminary run for nonLTRs using MGEScan-nonLTR and rec…
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Hi Hyungro
I ran MGEScan nonLTR locally not within galaxy. My nonLTR nonltr.gff3 output has a few features whose end coordinate is beyond the end of the sequence it is on. Any idea why this might b…
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Hi there,
I have made a guide to annotate plant TEs and reports generation, using a modified version of EDTA (full lineage annotation) together with AnnoSINE and mgescan nonltr and TEsorter.
I ho…
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See the test file: sandbox/mgescan/example1.txt
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We recompiled hmmer so will work on our version of centos but translate does not.
If I recompile I get segmentation error when try to run but seems same problem that not centos future proof.
./tra…
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Hi @oushujun,
I have been running the EDTA pipeline on several mollusc genomes to compare repeat content between species. My primary focus has been on examining how LTR content differs between prev…
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Dear:
working with Mac operating system,
```
**echo "n" | cpanm -n Data::Stag DB_File Bio::Root::Version Bio::SearchIO::blastxml Bio::SearchIO::hmmer**
Data::Stag is up to date. (0.14)
DB_F…
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hi,
i downloaded MeShClust-1.0.0 and compiled with make.
there's no meshclust in bin. only Red.
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Hi Evan,
Y ran tephra:
` nohup tephra all -c tephra_config.yml &`
since I want al types of TEs. I use a repbase.fasta from Solanum tuberosum for the repeatdb and left the others databases with the…