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Support that baseline can be fitted with either gene expression or protein abundance or methylation or … only
(or a combination of them?)
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Input requirements:
1. Count matrix of mRNA expression with samples in rows and genes in columns
2. Count matrix of smallRNA expression with samples in rows and genes in columns
3. Count matrix…
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Hi!
Thanks for coming up with this package. Did I understand correctly that this package can only be used to compare omics data between at least 2 groups (control and treated)? I am wondering if it i…
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OmicsProcessing was replaced with DataGeneration in berkeley
replace endpoints in the omics processing grouping https://data-berkeley.microbiomedata.org/api/docs#/omics_processing endpoints with da…
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## Description
Provide a detailed description of the new functionality or change. Explain how you would like the new feature or enhancement to work.
Hi, the census has been such a helping tool. …
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A1BG_cross = ov.multi_join({"umich proteomics": "A1BG", "bcm transcriptomics": "A1BG"})
Trace
AttributeError Traceback (most recent call last)
Cell In[17], [line 1](vsc…
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When I was writing the tests for parse outputs, I kept getting an error on this line of the code for oi2: df = df[df['in_solution'] == True] # Check whether this column can be empty before revising t…
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msamtools is a promising tool for omics analysis. I was wondering if there's a convenient helper script to combine the gene counts in profile outputs for multiple libraries? Thanks!
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Hi TeSS team,
I recently deployed a very wrong if/else case to my json-ld which added incorrect `mentions` to my materials. E.g. https://tess.elixir-europe.org/materials/marine-omics-identifying-bi…
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Hi Phil and Eric,
As a part of the [NOAA 'Omics Technical Portal](https://noaa-omics-technical-portal.readthedocs.io/en/latest/index.html) we are trying to add relevant tags to different NOAA 'Omic…