-
transferred back from https://github.com/cov-lineages/pango-designation/issues/2680
In the batch uploaded today from Philippines i noticed a weird a double AA mutation in the spike in a row.
Being…
-
It seems that S:F456L is very convergent in JN.1 now. (**last complete update June 19**)
- [*] Branch 1: JN.1.1.2+S:F456L, #1147 DEAD
- [*] Branch 2: JN.1.1+C9142T+S:F456L, #1249 DEAD
- [x] Bran…
-
Love this package!
Current outputs can be super verbose, especially for Pango lineages. I propose a cli flag to specify verbosity level:
- basic: output only the the release title
- mild: curre…
-
@aviczhl2 and me tracked abunch of sublineages stemming out from LE.1 with 456X:
>LE.1.1 , LE.1.3.1 , https://github.com/cov-lineages/pango-designation/issues/2663 and Branch 107 of # 1253 (secondary…
-
**Current Behavior**
There appears to be missing lineages from the https://github.com/corneliusroemer/pango-sequences/blob/main/data/pango-consensus-sequences_genome-nuc.fasta.zst file that are pre…
-
From branch 79 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+C6968T+S:F456L
Query: C6968T, T22928C, C18894T
No. of seqs: 30 (Canada 1 China 3 France 1 Singapore 3 Sou…
-
cc @AngieHinrichs this is likely another misplacement due high convergence in JN.1:
It is displayed in the JN.1.30 tree but it lacks (or has it reverted) G21255T.
Instead it has C27573T
My propos…
-
Formerly known as FLIRT Branch 63 (spotted by @aviczhl2)
Defining:
JN.1.11.1 > Orf1b:A2143V (C19895T) > S:R346T (G22599C)
Query : C19895T,G22599C,T3565C
Samples: 5 On Gisaid from Australia , …
-
It seems that there is JN.1.1.5+S:F456L(T22928C)) branch misplaced as JN.1.1.6+S:R346T+C9142T.
Note this branch is different from KR.1 as it doesn't have Orf9b:T72I.
And this branch now has a S:T57…
-
Hi,
we performed a comparison between Alcov (1.1.28) and Frejya and found some cases where variants found with Freyja (for example, LB, LK, LD, LF and KS) are never found with Alcov. However, I ca…