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Step 1: @DeirdreLoughnan runs a session on how to
Step 2: Make plots, including:
- Plot which species have scarification treatments (versus none) and chilling (versus none) and chemical (versus no…
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Hi @cmsmith91 I am working on the response to reviewer regarding the random assignment of genera within families. For this, I wanted to **retrieve the names of those genera that were randomly assigned…
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Some pages have phylogenies. E.g. /occurrence/4527469336
That hasn't been implemented yet. Currently there is just a hello world stub that shows a tree. But styling is missing and it needs to load th…
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**Describe the bug**
```
Fontconfig error: No writable cache directories
null device
1
```
When the R script [`create_phylogeny_And_heatmap.r`](https://github.com/Sydney-Informatics-Hu…
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Sorry to bother you both @dan-knight @whelena !
I was trying to plot one emulsiphy result and got this error. I was wondering if this is an edge case with multiple root nodes, or it is something co…
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## Add probability column to input dataframe
Probability column can also be a p-value.
Probabilistic edge (connected to a node with multiple parents) should be different in colour or line type compa…
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I got a question from a user how to include a phylogenetic distance matrix. At some point we have to finally tackle this problem.
At the moment I can think of two options:
a) phylogenetic distance …
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Hi,
I'm trying to run on the example dataset using the command
`python ~/Broccoli/broccoli.py -dir ~/Broccoli/example_dataset/ -ext '.fasta'`
with diamond version 4.0.515 and fasttree versio…
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Create phylogeny for each sample.
- [x] Create representative reference set to use as a whole genome backbone
- [x] Same for ompa gene only
- [ ] Create bed file of recombination regions to mask …