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# Statement of request
From an email of Jonathan's:
> I've been seeing in a number of places people using GO annotations to classify general types of genes/proteins.
>
> We have of course HGNC,…
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* phold version: 0.2.0
* Python version: 3.11.9
* Operating System: Ubuntu 22.04.4 LTS (GNU/Linux 5.15.0-101-generic x86_64)
### Description
Hi. I I am trying to annotate viral proteins
I …
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Hi Bokai and Shuxiao,
I would first like to thank you for developing this interesting method and making it open-sourced. I found the protein annotation and spatial pattern discovery section particu…
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Hello!
I'm having a slight issue with the annotations generated by EGAPx. When I translate the CDS into a protein sequence, I'm seeing a lot of premature stop codons. This is a species where I am s…
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Dear all,
The proposal has been made to obsolete
GO:0006487 protein N-linked glycosylation
see https://github.com/geneontology/go-ontology/issues/28538
Experimental annotations that need to …
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Hi,
this seems an awesome and very much needed package! I have 2 feature request: would it be possible to add protein secondary structure annotation (helices and beta-sheets) and also domain annota…
gezmi updated
1 month ago
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What is the selection criteria for GO annotations provided by UniProt? Are they supposed to provide all GO annotations from a UniProt entry because I've noticed the GO annotations in an UniProt entry …
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* **InterPro ID / label**
IPR012080
* **Example sequences with problematic annotation (ID + gene/protein name):**
https://www.ebi.ac.uk/QuickGO/annotations?geneProductId=P78780&aspect=biolo…
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[Slides from September 9 update are here.](https://docs.google.com/presentation/d/1B8ApOuedv3lUgZoRRgL_0LiPd4AcBVCXpQ_6Uc7-A6g/edit#slide=id.g2f2ef603ad3_0_0)
**Top priority, to do week of Septembe…
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Hello!
First of all, MetaCerberus is a great and very convenient tool to scan through multiple databases for functional annotation! Kudos to you all!
I've been using MetaCerberus to annotate geNo…