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- [x] write about visualization.
- [x] Read background
Todos:
- [x] Title including transcript id, protein id & name
- [x] transcript tract: get exon lengths from `tx_coordinates.get_cds_regions…
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- [x] The process of adding nodes is slow, we should figure out what part is slow (i.e. adding edges, getting current positions etc). There might also be a built-in delay in the addCyNodes function. -…
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The 3D visualization of the input protein is not being displayed due to the following error -
![image](https://github.com/dataprofessor/esmfold/assets/161757053/5d1a8b70-80ca-447d-b844-23fed5807186)…
ghost updated
4 weeks ago
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Hi,
I'm interested in capturing the exact state of the receptor after flexible docking.
It seems there is no description about that on docs, but is there any way to do that with vina?
If not…
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Hello Mol* Team,
I am using the Embedded Mol* viewer for molecular visualization and have two questions about its capabilities:
1) Is there an existing method to effectively highlight specific r…
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Useful to place the subnetwork in the context of the greater network. Large nodes represent hubs.
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My request is for developers to be able to work with pdb files with dynamic proteins, such as the play button option on PYmol.
This request won't help me in any way because this is for a university p…
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Hello!
I´ve been using Chromatiblock, and have managed to produce apparently correct visualizations. I´ve tried adding a protein list containing various aminoacid sequences for annotation using -g…
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The hgvs library has a built in (text-based) visualization, which allows to build a view of the context of a variant with the alignment between the transcript and the reference genome. It can create r…
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If I send a link with the same protein twice (eg. Duplicates in the link), then the map renders two different look ts for the same protein and it messes up the visualization / PPI network
Related to #…