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monarch-initiative
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genophenocorr
Genotype Phenotype Correlation
https://monarch-initiative.github.io/genophenocorr/stable
MIT License
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Added counts for duplicate features
#179
lnrekerle
opened
58 minutes ago
0
More mtc heuristic
#178
pnrobinson
opened
6 hours ago
0
Adding new MTC filter that allows the user to specific which term(s) …
#177
pnrobinson
closed
7 hours ago
2
Number Protein Regions
#176
lnrekerle
opened
5 days ago
0
Created ProteinRegionPredicate
#175
lnrekerle
closed
5 days ago
4
Create a predicate that tests if a variant affects a Region given by the User.
#174
lnrekerle
closed
5 days ago
2
Notebooks all work. Small changes so tables look good.
#173
lnrekerle
closed
1 week ago
5
Also add similar code for genomic visualization of variants
#172
pnrobinson
opened
1 month ago
0
add key with colors and names of protein ffeatures
#171
pnrobinson
opened
1 month ago
4
Check protein coordinates
#170
ielis
closed
1 month ago
1
Kmt2 d
#169
pnrobinson
closed
1 month ago
1
Restore the deleted `test_data_dir` fixture
#168
ielis
closed
1 month ago
0
Added disease viewable, variant and effect counts
#167
lnrekerle
closed
1 month ago
0
KMT2D
#166
pnrobinson
closed
1 month ago
0
Lmna
#165
pnrobinson
closed
1 month ago
0
ProteinMetadata
#164
pnrobinson
opened
1 month ago
2
fix bugs that are seen in the GitHub CI
#163
pnrobinson
closed
1 month ago
1
protein drawing
#162
pnrobinson
closed
1 month ago
1
Is there an off by one (two) error in the calculation of protein locations?
#161
pnrobinson
closed
1 month ago
2
Mtc
#160
pnrobinson
closed
1 month ago
2
Implement variant predicates and allele counter
#159
ielis
opened
1 month ago
3
Update the GitHub action names
#158
ielis
closed
1 month ago
0
Use *SUOX* cohort as a real-life test data, add JSON (de)serialization
#157
ielis
closed
1 month ago
0
structural variant
#156
pnrobinson
opened
1 month ago
0
Buffer vv response
#155
pnrobinson
closed
1 month ago
2
Kbg
#154
pnrobinson
closed
1 month ago
3
QC for variants is falsely finding errors
#153
pnrobinson
closed
1 month ago
1
PLA2G6 - correlations
#152
pnrobinson
opened
1 month ago
0
Added testing for disease predicates
#151
lnrekerle
closed
1 month ago
1
Lmna
#150
pnrobinson
closed
2 months ago
0
cohort_creator must be an instance of <class 'genophenocorr.preprocessing._patient.CohortCreator'> but was <class 'genophenocorr.preprocessing._phenopacket.PhenopacketPatientCreator'
#149
pnrobinson
closed
2 months ago
2
Draw variants transcript and protein
#148
pnrobinson
closed
2 months ago
3
RERE -- case
#147
pnrobinson
opened
2 months ago
0
CLDN16
#146
pnrobinson
closed
2 months ago
0
fixed the count issue with summarize
#145
lnrekerle
closed
2 months ago
10
Do we need observation status on `Disease`?
#144
ielis
closed
3 months ago
2
Add Disease to Patient
#143
lnrekerle
closed
3 months ago
0
Provide documentation for key methods
#142
pnrobinson
opened
3 months ago
0
var_single.summarize -- counts seem wrong
#141
pnrobinson
closed
2 months ago
0
Extract disease
#140
pnrobinson
closed
3 months ago
0
Beta statistical significance testing
#139
ielis
closed
1 week ago
2
changed all occurances of hgvsc_id to hgvs_cdna
#138
lnrekerle
closed
4 months ago
0
By disease/by gene
#137
pnrobinson
closed
1 month ago
1
Isolate G/P code
#136
ielis
closed
4 months ago
0
documentation
#135
pnrobinson
closed
3 months ago
3
Help user to retieve the clinical transcript
#134
pnrobinson
opened
4 months ago
0
Review the API
#133
ielis
opened
4 months ago
1
Contextualize the count with the cohort size in the G/P result summary
#132
ielis
closed
4 months ago
0
Humanize the analysis runner
#131
ielis
closed
4 months ago
0
Protein Service
#130
lnrekerle
closed
4 months ago
0
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