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Working on is in branch rad.
Need to decide on output format. Corresponds to step 5 output of ipyrad - https://ipyrad.readthedocs.io/en/latest/7-outline.html#consensus-base-calling-and-filtering
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Hi I have recently moved to using a new cluster. I am using version: ipyrad [v.0.9.95] on a cluster using 20 cores
ipyrad [v.0.9.95]
Interactive assembly and analysis of RAD-seq data
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Dear developper,
I'm interested in estimating piN/piS for 6 populations of individuals. The individuals were sequenced separately in RAD-seq, the reads mapped on the reference genome and then the v…
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Switching to mode IRI returns zeros in the RM column. Here is an example:
PIM:
```
seq rel_time time_width El Az STEC RM (rad/m2) VTEC factor STEC_error
0 : 0 -300.0…
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Provide the option to provide (plot) trajectories of bodies. For example, over 24 hours plot the hourly positions of Parker Solar Probe, connecting them with a line. This line could also have some col…
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Hi, thanks for releasing this awesome Boreas Dataset.
I have recently attempted visualization using the code provided below. The attached video demonstrates the output result. I am puzzled by the p…
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Hi, I am using the XA50 version of the Pulseq interpreter, and I think I found a bug in the interpretation of RF waveforms when defining them with a time_shape waveform.
This is a minimal working e…
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My experimental data is not whole genome sequencing but restriction site-associated DNA sequencing (RAD-seq), and I would like to know if I can use your software under such conditions.
Thanks again!
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There is several tutorials that would need some ❤️
Most of the changes are newcomer-friendly 😄
We created a checklist of the possible contributions on the tutorials: https://galaxyproject.github…
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### What happened?
I was running SCAM on my personal computer (cesm2.1.3, cam_cesm2_1_rel41). I found the bug when I set the `spectralflux` namelist option to true. This should have returned the spec…