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hi
I am having difficulties running the tool and get the output. The analysis skips all the variants for a gene and doesn't give out any results. Do you know what is wrong with the input ?
Thank…
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Hello, I would like to ask, what are the differences between the individual analysis in the STAARpipeline (analysis centered on a single locus variable) and the traditional GWAS analysis using the pli…
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Hi,
There seem to be a problem with running the following script below when I apply a --freqUpper filter of 0.01 or 0.05. The script would run without a problem when the --freqUpper is set to 1 (equ…
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We are using DROP in undiagnosed rare disease patient cohort. If I understand correctly, the underlying assumption of DROP is that all samples were taken randomly from a population, regardless of the …
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Hi @joellembatchou,
So I'm running regenie for UKB data while using the burden/skat-o options.
I was wondering if there's any workaround to include variants in which the REF allele is actually …
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### Description of the bug
ERROR ~ while scanning a simple key
in 'reader', line 3, column 1:
0.4.8
^ …
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Hi, i have the same problem.
I want to perform rare variants (MAF < 1%) analysis in Regenie, and have tried many times to follow your earlier advice to others, but still encounter the s…
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Interop Contact:
Active in 2021: Active
**Researchers**: Xihong Lin (Harvard T.H. Chan School of Public Health)
## Analysis Question:
Large-scale Whole Genome Sequencing (WGS) studies and biobanks h…
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Hi, I am using stringMLST and I noticed that I got different results for running the same sample more than once. The database changed (updated). What was surprising that some of the assigned ST's in t…
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The dunovo tutorial provides a great introduction to consensus correction and calling non-diploid low frequency variants:
http://galaxyproject.github.io/training-material/topics/variant-analysis/tu…