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Hi,
We've been trying to simulate Zymo mock communities using your "even" pre-trained model. We've consistently found *Staphylococcus aureus* to be seemingly undersimulated, while *Cryptococcus neo…
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https://github.com/vjjan91/nilgiris-resurvey-project/blob/916ead6085b23d12d5650c17f63404c6fa7fdc95/code/xx_relative-abundance-envtChange.Rmd#L6C1-L6C10
@pratikunterwegs I have currently removed thi…
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Hello! This is my first time using FUNGuild and I would like to know more about the ASV input table. Should I use read counts or relative abundances? I am trying to check this by opening the example O…
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Hello,
I would like to know if this tool gives the output file containing relative abundances of strains per sample.
Thank you
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**Improvement Description**
This would be consistent with what is shown in the barplots and is more useful than absolute counts (e.g., if a user wants to download and generate the same plots outside …
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Goal: Benchmark 'sourmash --track-abundance' to determine if the relative abundances reflect true abundances using a synthetic dataset with defined abundances.
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This is a new warning being generated by the tests, and I don't think there are actually should be collinear variables here so I'm not sure what's happening.
``` r
suppressPackageStartupMessages(l…
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Please add a data table to the repo that includes the abundance, count, read data for Trichodesmium (any species), Noctiluca scintillans & any Chatonella, Heterosigma and Pseudochattonella species (fi…
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Hello, and thanks for your repository.
I have been looking at the data, and I see that all abundances accessible are relative abundance. I haven't found any way to download counts data. Is count dat…
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**Describe the parameter code you need**
Metabarcoding datasets usually come with relative abundances in terms of sequence reads per ASV or OTU. This is a request for terms for:
- Total abundanc…