qiime2 q2-taxa issues - Githubissues

qiime2 / q2-taxa

BSD 3-Clause "New" or "Revised" License

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issues

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Allow users to filter/subset for desired samples based on metadata in the Web view

#167 colinbrislawn closed 3 months ago
2
IMP: Introduce ability to collapse Relative Frequency table

#166 hagenjp opened 4 months ago
0
Use ConfigParser instead of SafeConfigParser

#165 athos-ribeiro closed 6 months ago
1
Adds TypeMatch for PresenceAbsence, Frequency for inputs and outputs in plugin_setup.py

#164 hagenjp closed 6 months ago
1
Adds FeatureTable[PresenceAbsence] as input for taxa filter-table

#163 hagenjp closed 6 months ago
1
MAINT: python 3.9/pandas 2.* update

#162 colinvwood closed 7 months ago
0
qiime taxa filter-table should accept FeatureTable[PresenceAbsence]

#161 cherman2 closed 6 months ago
0
allow taxa barplot to take relative frequency

#160 colinvwood closed 5 months ago
1
CI: Updates to ci-dev workflow

#159 hagenjp closed 1 year ago
0
Taxonomy Bar Plot

#158 jmeilander opened 1 year ago
0
trigger on pr to test-pr, use alp/action@beta

#157 colinvwood closed 1 year ago
0
IMP: barplot accepts FeatureTable[PresenceAbsence] as input

#156 gregcaporaso closed 1 year ago
2
let barplot accept `FeatureTable[PresenceAbsence]` as input

#155 gregcaporaso closed 1 year ago
0
CI: add additional tests in commands section

#154 colinvwood closed 1 year ago
0
barplot: make taxonomy optional

#153 nbokulich closed 1 year ago
6
maint: update usage URL

#152 ebolyen closed 1 year ago
0
ci: force re-render for skbio update

#151 lizgehret closed 1 year ago
0
ex: adds usage examples for Hacktoberfest

#150 ChrisKeefe closed 2 years ago
1
enable generation of barplot from relative frequency table

#149 gregcaporaso closed 1 year ago
1
dep: rebuild for pandas >=1.2.5

#148 thermokarst closed 2 years ago
0
taxa-barplot: set 'others' group when plotting taxa

#147 lizgehret opened 2 years ago
4
dep: pin pandas

#146 thermokarst closed 2 years ago
0
recipe: nodejs host -> build

#145 Keegan-Evans closed 3 years ago
0
Allow filtering on multiple semantic types

#144 jwdebelius opened 3 years ago
3
ci: update recipe

#143 thermokarst closed 3 years ago
0
ci: library integration

#142 thermokarst closed 3 years ago
0
bug: forgot to change return type

#141 thermokarst closed 3 years ago
0
new: python 3.8

#140 thermokarst closed 3 years ago
0
feat: display # of cols of metadata in vis

#139 Keegan-Evans closed 3 years ago
0
Perform rank-aware padding before taxonomy collapse

#138 FranckLejzerowicz closed 2 years ago
4
Collapse will create different features for the same level, because of non rank-aware padding

#137 FranckLejzerowicz opened 3 years ago
4
PERF/BUG: avoid dense representation of the FeatureTable in collapse

#136 wasade closed 3 years ago
9
Collapse cannot handle large sparse tables due to pd.DataFrame

#135 wasade closed 3 years ago
0
imp: generate metadata if none provided + tests

#134 Keegan-Evans closed 3 years ago
2
bug: npm install --no-save

#133 thermokarst closed 3 years ago
0
Make barplot discrete color scheme assignment consistently start at the same color

#132 fedarko closed 3 years ago
0
BUG: Barplot labels glitch

#130 emford closed 4 years ago
4
Rearranged schemeAccent to make schemeDescent color palette fixes #111

#129 LeonardoALopezR closed 4 years ago
3
BUG: Fixed typo in raised error

#128 David-Rod closed 5 years ago
0
BUG: typo in barplot guard

#127 thermokarst closed 5 years ago
0
Fix two bugs related to changing taxonomic level in the barplot

#126 fedarko closed 5 years ago
3
Increase max bar width value

#125 fedarko closed 5 years ago
0
BUG: Raise ValueError if metadata is missing any IDs from feature table.

#124 Oddant1 closed 5 years ago
3
Make bar widths in taxa barplot adjustable

#123 fedarko closed 5 years ago
2
MAINT: Travis, bump to python 3.6

#122 thermokarst closed 5 years ago
0
MAINT: Updates for python 3.6

#121 thermokarst closed 5 years ago
0
MAINT: Updating copyright headers for 2019

#120 turanoo closed 5 years ago
0
allow search term parameters (`include` and `exclude`) in `qiime taxa filter` to be specified multiple times

#119 gregcaporaso opened 5 years ago
0
'barplot' exception handling

#118 Suttungr closed 5 years ago
3