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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
Branch 11: 368 seqs (4 in 2023 and 364 in 2024)
[usher](https://cov-spectrum.org/explore/World/AllSamples/Y2024/variants?nuc…
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Jn.1.16 seems to have acquired S:Q493E in Taiwan
Defining mutations:
Jn.1.16 >> A532G, Orf1a.G400S (G1463A) > Orf7a:F59K (T27568A, T27569A, T27570A) > C4543T, A14475G, S:S31P (T21653C), S:Q493E (C…
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I noticed this odd BN.1.3.5 singlet sequenced
hCoV-19/France/IDF-APHPSU_PSL-662405025479/2024|EPI_ISL_19193543|2024-05-12
BN.1.3.5 wasn't common in France, much more so in East/South East A…
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From branch 3 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502
JN.1.1+S:R346T+S:S31del
Query: del21653_21655,C11747T, G22599C,-9442
No. of seqs: 42
First: EPI_ISL_1887947…
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### **Description** Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1594
**Sub-lineage of:** KP.2.3 (= JN.1 + S:∆S31, S:H146Q, S:R346T, F456L, V1104L + ORF3a:K67N + O…
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From branch 25 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1.3+S:F456L
Query: T3565C,T22928C,C27945T,-C4777T
No. of seqs: 62
[usher](https://nextstrain.org/fetch/ge…
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From branch 79 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+C6968T+S:F456L
Query: C6968T, T22928C, C18894T
No. of seqs: 30 (Canada 1 China 3 France 1 Singapore 3 Sou…
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### Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1573
**Description**
**Sub-lineage of:** KP.3.1 (JN.1.11.1.3 = JN.1 + S:F456L, Q493E, V1104L)
**Earliest sequenc…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1645
KP.2.3+C28714T+A1087G+A23166C(S:K535T)
GISAID query: C28714T,A1087G,A23166C
No. of seqs: 37(USA 3 France 1 Spain 1 UK 32)…
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KP.3.1.1 is actually the lineage growing faster globally with a global share around 10% in the very few last weeks
(6% outside Spain)
Now there is a recent small branch that got S:A397V , it is pre…