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Model [01186](https://github.com/sbmlteam/sbml-test-suite/blob/7ab011efe471877987b5d6dcba8cc19a6ff71254/cases/semantic/01186/01186-model.m) (steady state metabolic model) is expected to pass in COBRAp…
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When I made the [BIOMD0000000001](https://www.ebi.ac.uk/biomodels/search?query=BIOMD0000000001&domain=biomodels) table (see issue #57) I noticed that the SBML and SED-ML files are not recognized as su…
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The temp-biomodels project has a lot of new SED-ML, and much of it is correctly interpreted by VCell, but there are some cases where there are breakdowns. Attached is a full list of every biomodel th…
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@SunnyXu Can you attach the OMEX file with the log axis that didn't work?
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Error: The implementation src_ext/extlib/src/extArray.pp.ml
does not match the interface src_ext/extlib/src/extArray.pp.ml: ...
In module Array:
Values do not match:
…
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= Description =
- Make the package compatible with all level 1 version 2 features.
= Context =
- SED-ML is the chosen language for encoding work flows in !BioPreDyn; the latest version of the languag…
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Including this additional SED-ML in the [attached example](https://github.com/sys-bio/tellurium/files/4497617/examples.zip)
```
Mcmin
```…
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Add support for Markov analysis in SED-ML.
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Create SED-ML annotations for any analysisView properties not already supported in our SED-ML file.
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Such as
- Steady-State Analysis
- Stoichiometric State Analysis
- MCA
- Lyapunov Exponents
- Time Scale Separation
- Sensitivity Analysis
Todo
- [ ] Map each COPASI method/parameter to a Ki…