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Thanks for sharing this crate with the community Jeff. It looks really clean!
I have some suggestions for additional codecs to support masked sequences. Of course, I can easily just implement these…
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Some specs require filtering with a predicate on a sequence, and it is hard to express these in Cryptol. There are various workarounds for this, but they are all a bit hacky, and even worse sometime…
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Hello,
After reading the below issues with looks like the handling of ansi escape control sequences is not currently supported, can you confirm if that is the case still?
https://github.com/rivo…
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### Describe the issue that you're seeing. Any Loom videos or screenshots usually help a lot!
Hello, I just setup the tina-cloud-start and converted it to be self hosted but every time I try to build…
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### Checked for duplicates
Yes - I've already checked
### Alternatives considered
No - I haven't considered
### Related problems
Teams often generate many sequences as once, and imported them all…
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Hi, when running AME in R with runAme and setting sequences = TRUE, I believe the 'sequences' variable is being set to the path to the sequences.tsv file.
Therefore importAme cannot evaluate this as…
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`augur merge` should support input `--sequences` and `--output-sequences`.
Features:
- Sequences with same id are coalesced right-to-left, as with metadata rows.
- Duplication handling within F…
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Hi,
I randomly sampled a subset of 16s RRNA sequences from the reference sequence fasta file (https://github.com/picrust/picrust2/tree/master/picrust2/default_files/prokaryotic)
/pro_ref/pro_ref.f…
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Hi, I've been trying to run VirSorter now and troubleshooting some, but I can't figure out why I'm not getting my viral sequences in my output. When I look in logs/err it's empty, the logs/out looks l…
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Hi. I'm probably doing something wrong myself, but here's my steps:
For a database with postgis, I'm using the official docker image `postgis/postgis:16-master`.
I've installed `longitude-one/do…