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We have recently performed and analysed the transcriptomic responses of _Madurella mycetomatis_ grain formation in our _Galleria mellonella_ infection model. Siderophores where expressed in all stadia…
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In this conversation, SIDERITE team will record the update of SIDERITE database.
Announce new siderophores will be added into database in advance.
The content is same with [Google Group of SIDER…
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I am trying to locate a ferric iron reductase term to curate frp1.
Currently it is annotated to
ferric-chelate reductase (NADPH) activity (GO:0052851)
Catalysis of the reaction: 2 Fe3+-siderophor…
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CARD is starting to curated sub-families of beta-lactamases into the ARO, but we should also start to curate sub-groups of beta-lactams, e.g., more specific groupings than just `cephalosporin`. Starti…
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* **GO term ID and label for which you request a new superclass**
GO:0033214 siderophore-dependent iron import into cell
* **New superclass (parent) suggested**
GO:0044718 siderophore transme…
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Hi,
Thanks for the pipeline. It made my work easy. I am interested in identifying iron siderophore synthesis in my metagenomic samples. When I run the fegenie pipeline without **--all_results** the …
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**MIBiG ID**
BGC0000294
**Short summary**
Add new literature: [Current biochemical understanding regarding the metabolism of acinetobactin, the major siderophore of the human pathogen Acinetobact…
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Hi, I did a test run using the Escherichia coli Nissle 1917 complete genome (NCBI ACCESSION: CP058217). I expected the microcin cluster can be identified since MIBiG has the BGC0000589: microcin M bio…
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@kehammond has suggested we make training tutorials to cover the main paper types
**Receptor decoys** (PMID:30220500) Suppression of Plant Immunity by Fungal Chitinase-like Effectors. #18
**R-A…
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Error in hclust(d = dist(x = fegenie.scaled)) :
NA/NaN/Inf in foreign function call (arg 10)
Calls: as.dendrogram -> hclust
Execution halted