-
Hi,
I just want to ask , can we use CellBender for Single Cell Gene Expression Flex Fixed RNA Profiling (FRP) seq samples to remove backgroud noise / Ambient RNA / empty Droplets because this seq is…
-
The GSE194122 dataset
The data sets are mentioned in two places, one says eight donors and the other says nine donors. The GEO website seems to have a total of 10 donors in this data set. Did you mak…
-
For new term requests, please provide the following information:
## Preferred term label
PIPseq
Asteria scRNA-seq
HIVE CLX
## Textual definition
PIPseq: The Fluent BioSciences PIPseq…
-
The @PavlidisLab/curation team compiled a list of single-cell experiments that need special treatment on import. We can convert those into test cases.
## Bulk/single-cell mix
Contains a mixture …
-
# Issue Report
## Please describe the issue:
Hello, I am currently performing target-specific custom barcode demultiplexing using Direct RNA seq data.
In the options, there is a setting for m…
-
## patch-seq assay
Label: patch-seq assay
Alternative term(s): patch clamp and RNA sequencing assay
Definition: A single-cell RNA sequencing assay that takes a patch clamp recording from a cell a…
-
-
## Preferred term label
STORM-seq
## Textual definition
Single-cell TOtal RNA Miniaturized sequencing. A full-length single-cell ribo-reduced RNA sequencing protocol, optimized to profile tho…
-
Hi,
CCPE is a useful tool to compute cell cycle pseudotime using single-cell RNA-seq data with ground truth. I also found that the paper described that CCPE could be used to analyze datasets without …
-
Hello, Dr. He. Sorry to bother you again.
I already knew that SEVtras would work with single cell RNA sequencing data produced by the 10x genomics chromium , which is based on droplet sequencing, but…