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Hi,
Has anyone tried Demuxlet on single nuclei using 10x? Does it work?
Also, what are people using for genotyping of human samples?
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### Describe your feature request
Implement a feature in Nuclei that prompts the user to log in to the ProjectDiscovery Cloud Platform (PDCP) on the first run if no existing credentials are found. Th…
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Hi!
I am trying to compare mean and noise values between two datasets, one is single cell and one is single nuclei. both runs were performed on the same platform, with identical conditions, and the s…
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- [ ] Create new (Cell/Nuclei) Flex Pool entity - needs volume property, needs to calculate volume of parent entity
- [x] Create new Flex Preamp entity
- [x] Update 'Cell' entity type to include billi…
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On behalf of the Aerosol and Chemistry Model Intercomparison Project for CMIP7, I would like to propose standard names for a number of variables for which no standard name currently exists. These are …
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### Nuclei version:
Nuclei Engine Version: v3.3.0
## Nuclei command:
```bash
nuclei -l openapi.json -im openapi -t templates -sresp -secret-file secrets.yaml -debug
```
secrets.yaml
```yaml…
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I am trying to analyse RNA-velocity for single-nuclei RNA sequencing data from 10X platform. I am not sure in detail how it calculates the unspliced/spliced rate when I run the command 'velocyto run10…
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Hello,
first of all thanks for this really useful tool! I have one BAM file with single nuclei data from 8 conditions. I run the isoquant like this:
isoquant.py --reference /path/Mus_musculus.GRCm3…
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Hi,
I have been meaning to try this tool for some time now. We do a lot of single-nuclei RNA-seq, as a result we end up capturing lot of reads from the pre-mrna . In order to deal with that , 1…
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- I am an ELNer/ ELN admin
Please add 1H{19F} fluor decoupled 1H-NMR as Type ( Chemical Methods Ontologly) in the Analyses Tab. It's not listed yet.