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Something like https://research.libd.org/Visium_SPG_AD/ or https://research.libd.org/spatialDLPFC/. If so, use a `README.Rmd` instead of a `README.md` file like https://github.com/LieberInstitute/Visi…
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Can iSEE support Spatial transcriptomics data that is contained within a SPE (SpatialExperiment) object? I have 10x Visium data in an SPE and tried running ```iSEE(SPE)``` which opened a shiny app wit…
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Maybe this is already possible? But I have 6 10x Visium datasets that I would like to upload to 1 shiny app for data mining and sharing. If possible, would the best approach be to construct 1 master S…
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Could you please give me a link to download 30 full size images or at least high resolution?
Thanks a lot! I cant connect to globus.
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Hi,
Me and my colleagues frequently deploy `shiny` apps to shinyapps.io where we use Bioconductor packages. This involves deploying an app with the `rsconnect` package, as for example you can see a…
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Fantastic work.
In [https://github.com/LieberInstitute/spatialDLPFC/tree/main/processed-data/spot_deconvo](https://github.com/LieberInstitute/spatialDLPFC/tree/main/processed-data/spot_deconvo) you…
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## Describe the bug
Thanks for creating and maintaining the awesome `spatialLIBD` package. Recently, I was trying to conduct spatial registration by running `registration_wrapper` function on a `Sp…
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Dear Author,
Thank you for your excellent work!
May I know where I can access the histology images(*.tif) of the Visium(n=30) data?
In the adata_vis_orig.h5ad, the sample id of the Visium(n=3…
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I noticed some strange behavior in `vis_grid_clus()` when trying to plot logical variables such as `in_tissue`, the same variables plot as expected in `vis_clus()`. Converting the lgl to factor does n…
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Thanks for the nice package!
I've been using `vis_grid_clus` to plot multiple samples together. I noticed the legends representing levels of `clustervar` are always turning to numbers instead of sh…