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Instead of a special file format, we should perhaps be writing out SSSOM file.
Is that going to make the files even more gigantic? Probably? Is that a problem?
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it's near impossible to find the list of all of the fields in SSSOM. This should be the third thing on the https://mapping-commons.github.io/sssom/ after 1. an explanation of what SSSOM is/what it's f…
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Just as we want to have Babel write SSSOM, NN will need to read it.
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## Overview
As of now, I'm getting errors if I run on `obolibrary/odkfull:` `latest` or `dev`. Right now we are stuck to `v1.4.3`.
## Sub-tasks
- [ ] 1. Get working on `latest`
- [x] 2. Find out…
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This is a task associated with the charter epic #7
### Which mapping tool or framework do you want to introduce to our Working Group?
Simple Standard for Sharing Ontological Mappings (SSSOM)
* …
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I don't know if this is feasible for the gene sources yet, but with the new VRS 2.0 xref model, the space is there if we can get them.
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## Overview
Some of the `object_label`s in `mondo.sssom.tsv` are missing or are not in agreement with what is currently in the source.
## Examples
- OMIM, all cases (except where subject or objec…
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Dear Planteome team!
Just looked at your great 2024 Planteome Paper, congratulations. I looked at your SSSOM files, and I would suggest the following:
1. Create a registry for all your mapping f…
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The mapping pipeline currently generates a sssom file with only the `exact` mappings.
For various use cases, including boomer and mondo source sync, we need `mondo-all.sssom.tsv` as well, which sim…
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Parse files from the "Simple Standard for Sharing Ontology Mappings (SSSOM)": https://mapping-commons.github.io/sssom/usecases/