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Hi,
I've been using `scimilarity` to annotate cells in multiple different datasets. As a sanity check, I ran `scimilarity` on cells for which I already had cell type annotations performed with ano…
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**CL term**
`fibroblast` is a child of `connective tissue cell`
`stromal cell` is a child of `connective tissue cell`
However, there is no relationship between fibroblast and stromal cell. It i…
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### Description
in the following table definition, the comma of 3 lines:
is_ffpe text NULL -- is_ffpe; Indicator to signify whether or not the tissue sample was fixed in formalin and embedded i…
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when I check the result of function select.marker, sc.dat.filtered.pc.sig, I found it return all rows of NA in stromal cells, while other cells didn't. How to solve it? thanks you!
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- [48d354f5-a5ca-4f35-a3bb-fa3687502252](https://cellxgene.cziscience.com/collections/48d354f5-a5ca-4f35-a3bb-fa3687502252)
- obs.var_time:P7 - update to 7 day [MmusDv:0000117]
- [d86517f0-fa7e-4…
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I make a selection of cells from my Dimensionality reduction plot 1 and trasmit it to my Dimensionality reduction plot 2, in order to explore cell subsets in the main cell type I selected from the fir…
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Hi there, when trying to run SpaCET with these data (https://www.10xgenomics.com/products/xenium-in-situ/preview-dataset-human-breast), I am getting an error at the SpaCET.deconvolution.matched.scRNAs…
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Project Title: Melanoma infiltration of stromal and immune cellsProject UUID: 8c3c290d-dfff-4553-8868-54ce45f4ba7fWrangler/s: Mallory,Ann,Freeberg; Danielle,,Welter; PI/s: N/ASpecies: ['mus musculus']…
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Project Title: Melanoma infiltration of stromal and immune cellsProject Short Name: Mouse MelanomaProject UUID: 8c3c290d-dfff-4553-8868-54ce45f4ba7fWrangler/s: Mallory,Ann,Freeberg; Danielle,,Welter; …
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Dear authors:
Thanks for your great work!
I just downloaded processed matrices can be accessed and downloaded from [www.reproductivecellatlas.org],howerver i found 860 decidualised endometrial s…