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The CryoET Workflow article is live on the docs site, but there are a few improvements needed.
- [ ] For all figures use 75% fill and trim whitespace for any graphics that have large borders
- [ ] F…
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to be added to aitom.average.align.simple_iterative.average
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Dear PyTom developers:
Thank you very much for developing such an amazing tomography processing framework! The template matching result from PyTom is very helpful. However, it is necessary to fi…
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Hi,
My Class3D job in RELION5 failed with the above mentioned error: I guess this is related to issue #582 which has never been solved it looks like(?)
All my Class3D (as well as Refine3D) jobs ru…
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Installed current relion 5 on centOS 9. Am trying the subtomogram averaging tutorial with the HIV VLP data set. Worked well up to "Reconstruct tomograms". Tomograms have been generated and look fine. …
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Get rid of
ctf 3d templateSearch
v2 templateSearch ... CTF
Instead, infer "templateSearch" when "init" has not been run (no .mat) and always use v2 template search
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I was trying to do subtomogram averaging, and the command is
e2spt_refine.py sets/template_bin4.lst --reference=sptsgd_03/threed_05.hdf --niter=5 --sym=c1 --mass=3000.0 --goldstandard=30 --pkeep=0.8…
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Hello,
I've been attempting to use RELION's tomography suite for sub tomogram averaging. However I've consistently run into difficulties using the Reconstruction modality. I've been following Relion/…
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Author Name: **Anchi Cheng** (@anchi2c)
Original Redmine Issue: 496, https://emg.nysbc.org/redmine/issues/496
Original Date: 2010-05-17
Original Assignee: Pick-Wei Lau
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It makes no sense to…
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- tomography related projects use as input stacks of micrographs.
- it would be ideal to create a protocol that from a set of micrographs creates a set of stacks of micrographs
Input movies have t…