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Hi Everyone,
I was successfully able to run TEtranscript using these codes in command line:
```
singularity exec tetranscripts.sif TEtranscripts \
-t /home/tud03125/pipeline/mouse_liver_rnas…
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Hello,
I am trying to prepare a data file for visualization using this software, but I don't understand what the score values in the 4th column of your example file (rice_MH63_repeat.bed) mean, as…
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Statistics output results. I run HiTE using the default parameters, and since I did not add ```--intact_anno 1``` parameter, there are no gff files and tbl files. Is there a script that can output it …
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Behat has full support for PHP 8 Attributes since version 3.10.0.
For example, this means that instead of
```
/**
* @Given something
*/
public function something() {}
```
it is now po…
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Hi,
Are the .gtf and the prebuilt_indices are somehow related ?
I download both and I got different annotations:
https://labshare.cshl.edu/shares/mhammelllab/www-data/TEtranscripts/TE_GTF/T2T…
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when i tried to build a TE index,there always show me that
INFO @ Thu, 24 Oct 2024 11:14:53: Building TE index .......
chrA01 EDTA DNA/Helitron 1241 1375 . - . gene_id "nbis-gene-1"; transcrip…
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Hello,
Thank you for sharing this great tool for us to explore transposon in NGS data. Currently, I am using it to investigate TE in human RNAseq data. I enter a problem in the combine_hit…
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Hi, I am using this the --make_annotaion preprocessing to run a multiple samples TE detecting,but after I ran out the --make_annotation,then I use -1 -2 to add sample,and find a repeat annotation step…
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Hello,
I have a hybrid plant genome with two haplotypes (Hap#1=1.6Gb with 22 chromosomes and Hap#2=1.8Gb with 24 chromosomes). I wanted to mask the genome, but RepeatMasker seems to be stalling in…