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Dear Dr. Ou,
I got an error,when i run the EDTA.pl for a plant genome. Please help me to figure this out.
Tue Jul 16 11:17:49 CST 2024 EDTA_raw: Check dependencies, prepare working directories.
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### Actual behavior
```
Traceback (most recent call last):
File "demo.py", line 25, in
vm = relax.VirtualMachine(ex, tvm.cpu())
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/sof…
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`singularity exec ../EDTA.sif EDTA.pl --genome genome.fa --cds genome.cds.fa --curatedlib ../database/rice7.0.0.liban --exclude genome.exclude.bed --overwrite 1 --sensitive 1 --anno 1 --threads 5
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Dear Dr. Ou,
Thanks for the EDTA software. I have installed EDTA via conda and the test run was fine. However with a plant genome, it got some errors about low disk space, perhaps at the stage of T…
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Hello Dr. Ou! I have a transposable element (TE) that was annotated using RepeatModeler, resulting in a complete 3.5kb CACTA_TIR_transposon. However, using the EDTA2 and the latest panEDTA pipeline, t…
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An error occurred when running the sif file. --annotate 1 --plant 1 --intact_anno 1
```
2024-07-24 20:57:48,357 - main.py[line:316] - INFO:
--------------------------------------------------------…
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### Cost associated with Operational Performance Testing
Might not have the funding available to do a real-life performance test. Mitigations need to include what we can do if the costs are too hi…
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Input:
```json
{
"config_id": "config",
"messages": [
{
"role": "user",
"content": "How to cook egg\n"
}
]
}
```
Logs:
```
Event Utt…
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I want to train using the given 2 stage approach but on an external data (responses generated in Cot and TIR format on math questions).
Pls help how to proceed?
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Copy over from Heimdall for the most part. Key one we need is LDAPS. Will probably require changes to the user model / other db stuff so that we have all the fields we need. ATM, all we need is to …