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Greeting there,
I am new to the PyTom. I have several datasets were collected with VPP and defocus 0.5um.
I want to confirm before I start that whether the 3D template matching will works on this…
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I want to use tomopy to align the projections using the align_joint function
**To Reproduce (if applicable)**
`proj=tomopy.prep.alignment.align_joint(proj, angles, fdir='./', iters=3, pad=(4, 4)…
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Dear Sir
We have tried multiple times to create TOMO_SAC jobs to do after doing the steps-
> msnoise reset STACK --all
> msnoise stack -r
Both the steps run without an error, however no SAC jobs…
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Running on a Linux Deb 12 compute cluster, have tried on various GPU nodes.
Running relion/5 beta-3-commit-6331fe.
For example when I run the command below:
relion_python_tomo_align_tilt_ser…
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Installed Relion5.0. with no problem. Runs with programs in the environment.yml (relion_blush; topaz etc)
Currently want to run relion --tomo ( Relion-5.0-beta-1-commit-b75b38) and get the err…
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The forward and adjoint operators are incorrect by using the following commands:
ray_trafo = odl.tomo.RayTransform(reco_space, geometry)
proj_data = ray_trafo(phantom)
backproj = ray_trafo.adjoin…
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Question describe:
In MUYSC_Tomo.ipynb I found that I don't know how to output "coordinates.dat", "heightmap.dat" and "heightmap2.dat". And those data are required in sentences:
points = get_coo…
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![screen shot 2018-10-30 at 19 51 38](https://user-images.githubusercontent.com/203495/47746278-baee4400-dc7d-11e8-81b9-874ed83363c3.png)
ronoc updated
4 months ago
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Dear developer, I would like to ask how to use the small program "relion_tomo_tomo_ctf" in relion5 to estimate the CTF of tilt-series? What I'm most interested in is the format of the file following -…
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Dear PyTom developers:
Thank you very much for developing such an amazing tomography processing framework! The template matching result from PyTom is very helpful. However, it is necessary to fi…